SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000064607
Gene: SUGP2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:18990888-19034023 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_113200618 chr19:18944738-18986837 Sample_02_1132 Pancreas KLM1 wt 618 16 1250 106 0 17 0 GDF1,HOMER3,SUGP2,ARMC6,CERS1,DDX49,COPE
SE_02_153900830 chr19:18949758-18986910 Sample_02_1539 Nasopharyngeal C666-1 830 12 1127 105 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_103200628 chr19:18952293-18983971 Sample_02_1032 Head and neck SCC1 JQ1 628 9 984 93 0 0 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_084100350 chr19:18959606-18988594 Sample_02_0841 Blood THP-1_untr 350 7 886 96 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_033400131 chr19:18962143-18988693 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 131 2 809 93 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033200131 chr19:18963065-18988778 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 131 3 792 93 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_133100115 chr19:18963225-18989887 Sample_02_1331 Blood Molm13_CTRL 115 9 831 104 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_033300085 chr19:18963264-18987712 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 85 3 761 89 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033500087 chr19:18963316-18988646 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 87 3 778 91 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_109800179 chr19:18964972-18986771 Sample_02_1098 Blood THP1_DMSO_noPMA 179 7 669 83 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_068200051 chr19:18965351-18986903 Sample_02_0682 Blood Kasumi-1 51 9 660 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE,TMEM161A
SE_02_046000132 chr19:18965409-18986850 Sample_02_0460 Blood ME-1_I-10-49_6h 132 8 657 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_133000793 chr19:18965822-18988507 Sample_02_1330 Blood AMU-AML1 793 11 690 86 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_045900371 chr19:18965860-18986894 Sample_02_0459 Blood ME-1_DMSO_6h 371 4 640 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_134000392 chr19:18965894-18986754 Sample_02_1340 Blood acute myeloid leukemia 392 4 634 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057800279 chr19:18965925-18986820 Sample_02_0578 Blood MOLM-13_sgSIK3e4 279 9 637 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_014400351 chr19:18965988-18986646 Sample_02_0144 Peripheral blood MV411_DMSO 351 2 631 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_033100310 chr19:18966014-18986234 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 310 4 617 81 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_135000570 chr19:18966034-18986301 Sample_02_1350 Leukophereses leukophereses_p456 570 3 621 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_054800142 chr19:18966038-18986809 Sample_02_0548 Blood THP-1_24h with EtOH 142 6 634 82 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_025600753 chr19:18966068-18987051 Sample_02_0256 Peripheral blood MV411 753 6 637 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_00_000600500 chr19:18966081-18986389 Sample_00_0006 Blood CD14-positive-monocyte 500 2 622 82 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_034600104 chr19:18966117-18986053 Sample_02_0346 Blood AML10 104 4 609 80 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_058100378 chr19:18966159-18986341 Sample_02_0581 Blood MOLM13_empty_HG 378 3 617 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057400355 chr19:18966185-18986853 Sample_02_0574 Blood MOLM-13_sgNeg2 355 7 629 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057500403 chr19:18966256-18985890 Sample_02_0575 Blood MOLM13_sgLKB1e2 403 4 604 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099300185 chr19:18966355-18985710 Sample_02_0993 Blood MOLM-13_empty 185 4 596 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_034500334 chr19:18966359-18985986 Sample_02_0345 Blood AML8 334 5 603 79 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_025500701 chr19:18966365-18986030 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 701 4 604 80 0 4 0 HOMER3,DDX49,COPE,SUGP2,ARMC6
SE_02_134800462 chr19:18966381-18986160 Sample_02_1348 Leukophereses leukophereses_p408 462 3 608 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_058200519 chr19:18966394-18986057 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 519 2 604 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_134200089 chr19:18966403-18985872 Sample_02_1342 Blood NB4 89 8 598 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099500204 chr19:18966424-18985941 Sample_02_0995 Blood MOLM-13_empty vector 204 5 601 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_057700419 chr19:18966442-18985933 Sample_02_0577 Blood MOLM13_empty 419 2 599 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_099400277 chr19:18966447-18985923 Sample_02_0994 Blood MOLM13_SIK3TQ 277 5 598 78 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_050100273 chr19:18966506-18986635 Sample_02_0501 Blood HL-60_CTRL 273 4 617 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_00_005500973 chr19:18966508-18986737 Sample_00_0055 Spleen spleen 34y 973 11 618 81 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE,GDF1,CERS1
SE_02_046100398 chr19:18966549-18986159 Sample_02_0461 Blood MV-4-11-B cells 398 6 601 80 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_092600195 chr19:18966597-18986172 Sample_02_0926 Blood NB4_1 195 19 600 79 0 4 0 HOMER3,SUGP2,ARMC6,DDX49,COPE
SE_02_032600314 chr19:19039756-19113189 Sample_02_0326 Liver hepatocytes_d3 314 11 1947 183 3 115 2590 SLC25A42,ARMC6,SUGP2,TMEM161A
SE_02_104600711 chr19:19043867-19121786 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 711 22 2126 205 3 139 3028 SLC25A42,ARMC6,TMEM161A,SUGP2,MEF2B
SE_02_122900127 chr19:19053059-19138453 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 127 45 2330 235 2 151 3369 SLC25A42,ARMC6,TMEM161A,SUGP2,MEF2B,NR2C2AP,MEF2BNB
SE_02_146700280 chr19:19053966-19074376 Sample_02_1467 Blood HUDEP-2_LRFKO 280 4 578 65 1 58 869 SLC25A42,ARMC6,SUGP2
SE_04_000100153 chr19:19054042-19067399 Sample_04_0001 Blood heat shocked K562 153 2 387 45 1 57 843 SLC25A42,ARMC6,SUGP2
SE_02_113000283 chr19:19054069-19078849 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 283 7 690 73 1 64 840 SLC25A42,ARMC6,SUGP2
SE_04_000200516 chr19:19056411-19067088 Sample_04_0002 Blood cold shocked K562 516 1 283 36 1 43 530 SLC25A42,ARMC6,SUGP2
SE_02_146600539 chr19:19056425-19065489 Sample_02_1466 Blood HUDEP-2_BCL11AKO 539 1 245 31 1 42 530 SLC25A42,ARMC6,SUGP2
SE_02_001600528 chr19:19056686-19065833 Sample_02_0016 Blood erythroblasts 528 1 248 31 1 43 530 SLC25A42,ARMC6,SUGP2
SE_01_003900650 chr19:19057273-19063871 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 650 2 189 22 0 28 399 ARMC6,SUGP2,SLC25A42,ARC6,TE161A
SE_02_111600354 chr19:19057481-19066774 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 354 1 249 27 1 40 479 SLC25A42,ARMC6,SUGP2
SE_02_142300265 chr19:19057628-19069527 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 265 4 306 35 1 35 447 SLC25A42,ARMC6,SUGP2
SE_02_109900472 chr19:19057868-19069335 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 472 6 294 33 1 35 390 SLC25A42,ARMC6,SUGP2
SE_02_054500805 chr19:19058259-19066432 Sample_02_0545 Bone marrow K562 WT 805 3 212 20 1 35 294 SLC25A42,ARMC6,SUGP2
SE_01_008700229 chr19:19058373-19113194 Sample_01_0087 Thyroid gland thyroid-gland 229 8 1417 127 2 77 1612 SLC25A42,SUGP2,ARMC6,TMEM161A
SE_01_009700615 chr19:19058784-19095969 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 615 7 961 96 1 42 304 SLC25A42,ARMC6,TMEM161A,SUGP2
SE_02_136300659 chr19:19058983-19063557 Sample_02_1363 Blood Hudep2 659 1 121 12 0 13 141 ARMC6,SLC25A42,SUGP2
SE_01_010500276 chr19:19059144-19112835 Sample_01_0105 Thyroid gland thyroid gland_54y 276 19 1388 122 2 77 1553 SLC25A42,ARMC6,TMEM161A,SUGP2
SE_02_104301136 chr19:19059753-19092637 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1136 17 844 84 1 37 135 SLC25A42,ARMC6,TMEM161A,SUGP2
SE_02_098901430 chr19:19061316-19120395 Sample_02_0989 Kidney kidney cortex_WT 1430 13 1587 149 2 74 1715 SLC25A42,TMEM161A,SUGP2,MEF2B,ARMC6
SE_02_122300597 chr19:19063917-19070010 Sample_02_1223 Bone marrow KMS28BM 597 1 139 14 1 14 108 SLC25A42,ARMC6,SUGP2
SE_02_104800933 chr19:19075472-19112715 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 933 8 968 81 1 34 1274 SLC25A42,ARMC6,TMEM161A,SUGP2
SE_02_092901121 chr19:19081663-19106633 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1121 13 659 56 1 18 585 SLC25A42,ARMC6,TMEM161A,SUGP2
Genomic distribution of SEs associated with SUGP2
Genome Browser

The strength of the tissue affected by the gene

Expression of SUGP2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)