SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000054796
Gene: SPO11 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:57329803-57343994 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_097000055 chr20:57156206-57292425 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 55 30 4166 317 11 369 1516 BMP7-AS1,BMP7,SPO11,MIR4325
SE_02_110100091 chr20:57166927-57292933 Sample_02_1101 Brain KELLY 91 54 3784 282 11 348 1516 BMP7-AS1,BMP7,SPO11,MIR4325
SE_02_054200203 chr20:57188874-57292784 Sample_02_0542 Brain Kelly_ResJQ1 203 30 3086 247 11 288 805 BMP7-AS1,BMP7,SPO11,MIR4325
SE_02_115500308 chr20:57210374-57290509 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 308 13 2341 201 11 251 700 BMP7-AS1,BMP7,SPO11,MIR4325
SE_02_117800184 chr20:57211577-57290605 Sample_02_1178 Brain GBM07 184 17 2310 200 11 251 700 BMP7-AS1,BMP7,SPO11,MIR4325
SE_02_021300587 chr20:57228404-57290714 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 587 9 1719 132 8 214 634 BMP7,SPO11,MIR4325
SE_02_095800079 chr20:57233370-57290716 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 79 18 1588 110 8 211 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_096200128 chr20:57234226-57290558 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 128 15 1549 106 8 211 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_063300468 chr20:57237123-57288119 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 468 13 1397 93 8 205 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_063200512 chr20:57237131-57287584 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 512 15 1383 93 8 205 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_030400085 chr20:57240227-57293029 Sample_02_0304 Neuroblastoma N206 85 7 1460 94 8 214 607 BMP7,SPO11,MIR4325
SE_02_118700183 chr20:57240860-57291391 Sample_02_1187 Brain GBM16 183 13 1399 91 8 211 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_001900150 chr20:57240879-57295461 Sample_02_0019 Embryo Neural crest cells 150 14 1508 101 8 216 607 BMP7,SPO11,MIR4325
SE_02_123900044 chr20:57242103-57328818 Sample_02_1239 Skin Waga_virus_positive 44 26 2392 165 8 230 666 BMP7,MIR4325,RAE1,MTRNR2L3,SPO11,BMP7-AS1
SE_02_101700929 chr20:57243541-57294977 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 929 12 1418 95 7 214 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_088500854 chr20:57243677-57292634 Sample_02_0885 Blood NALM6_2 854 13 1355 87 7 209 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_056500009 chr20:57243684-57279851 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 9 10 973 69 6 200 471 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_003901233 chr20:57244043-57295766 Sample_02_0039 Embryo AFG 1233 11 1425 93 7 214 607 BMP7,SPO11,MIR4325
SE_02_122500360 chr20:57244057-57292528 Sample_02_1225 Bone marrow RAJI 360 28 1339 86 7 209 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_055300098 chr20:57250838-57292958 Sample_02_0553 Other HSSY2 shCt 98 20 1153 62 2 201 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_004000534 chr20:57252521-57295273 Sample_02_0040 Embryo PFG 534 9 1154 64 1 203 607 BMP7,SPO11,MIR4325
SE_00_003800203 chr20:57256887-57290948 Sample_00_0038 Spinal cord spinal-cord_108d 203 4 937 46 1 191 607 BMP7,SPO11,MIR4325
SE_02_078100311 chr20:57257527-57293103 Sample_02_0781 Lymphoma Pfeiffer_DMSO 311 1 994 50 1 193 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_123700748 chr20:57257558-57291837 Sample_02_1237 Skin MKL2_virus_positive 748 9 957 48 1 190 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_035600205 chr20:57261548-57295688 Sample_02_0356 Colon Sw480 205 6 934 49 1 125 607 BMP7,SPO11,MIR4325
SE_02_052100171 chr20:57261905-57295366 Sample_02_0521 Colon SW480 171 8 913 49 1 122 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_035800304 chr20:57261921-57295645 Sample_02_0358 Colon LS180 304 5 923 49 1 121 607 BMP7,SPO11,MIR4325
SE_02_121800061 chr20:57262077-57285204 Sample_02_1218 Bone marrow Daudi 61 1 613 29 1 108 607 BMP7,BMP7-AS1,SPO11,MIR4325
SE_02_115300542 chr20:57270004-57290464 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 542 1 583 26 1 26 136 SPO11,BMP7,MIR4325
SE_01_009600178 chr20:57272496-57286896 Sample_01_0096 B-cell lymphoma DOHH2 178 1 409 17 1 14 136 SPO11,BMP7,MIR4325
SE_02_115400454 chr20:57272549-57290538 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 454 1 514 22 1 20 136 SPO11,BMP7,MIR4325
SE_02_099900604 chr20:57275421-57285154 Sample_02_0999 Lymphoma OCI-LY1_966 604 1 278 11 1 14 136 SPO11,BMP7,MIR4325
SE_02_019700108 chr20:57277298-57288289 Sample_02_0197 Stomach SNU1750 108 4 312 10 1 14 136 SPO11,BMP7,MIR4325
SE_01_005300318 chr20:57277409-57294300 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 318 1 490 25 1 23 136 SPO11,BMP7,MIR4325
SE_02_085701283 chr20:57280040-57290549 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1283 3 307 13 1 9 136 SPO11,BMP7,MIR4325
SE_02_080100535 chr20:57282177-57290644 Sample_02_0801 Brain 2235 535 4 246 12 0 9 127 SPO11,BMP7,MIR4325
SE_01_009500485 chr20:57282209-57295810 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 485 4 397 24 0 14 127 SPO11,BMP7,MIR4325
SE_00_001001218 chr20:57282341-57290544 Sample_00_0010 Embryo endodermal-cell 1218 3 239 12 0 9 113 SPO11,BMP7,MIR4325
SE_02_032200294 chr20:57285252-57319315 Sample_02_0322 Colon Caco-2 294 3 976 70 0 26 0 RAE1,SPO11,MIR4325,BMP7,MTRNR2L3
SE_02_121800914 chr20:57285350-57293300 Sample_02_1218 Bone marrow Daudi 914 1 249 16 0 9 0 SPO11,BMP7,MIR4325
SE_02_035400690 chr20:57294532-57328880 Sample_02_0354 Colon Colo205 690 6 947 69 1 18 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_094500199 chr20:57305158-57327815 Sample_02_0945 Brain SF767 199 8 611 47 1 16 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_088500716 chr20:57305376-57327313 Sample_02_0885 Blood NALM6_2 716 5 592 45 1 16 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_01_005500329 chr20:57307709-57328955 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 329 4 570 43 1 12 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_012200501 chr20:57307810-57328647 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 501 4 562 43 1 12 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_106500467 chr20:57308234-57328912 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 467 4 554 43 1 12 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_099800379 chr20:57312064-57323791 Sample_02_0998 Lymphoma OCI-LY1_DMSO 379 1 339 27 1 0 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_028800706 chr20:57314662-57327844 Sample_02_0288 Tonsil CB5_H3K27Ac 706 2 376 31 1 1 59 MIR4325,RAE1,SPO11,BMP7,MTRNR2L3
SE_02_087500461 chr20:57354773-57454592 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 461 28 3330 219 19 154 1654 RAE1,MTRNR2L3,RBM38,SPO11,MIR4325,CTCFL
SE_02_039602039 chr20:57361615-57442575 Sample_02_0396 Skin NHEK-D 2039 19 2700 166 14 147 1433 RAE1,RBM38,MTRNR2L3,MIR4325,SPO11
SE_02_104700028 chr20:57361769-57453603 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 28 46 3029 186 16 150 1433 RAE1,RBM38,SPO11,MIR4325,MTRNR2L3
SE_02_003500220 chr20:57366300-57401939 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 220 8 1155 76 1 89 908 RAE1,RBM38,MTRNR2L3,MIR4325,SPO11
SE_02_003400222 chr20:57369006-57401851 Sample_02_0034 Peripheral blood CUTLL1_GSI 222 5 1074 76 1 81 816 RAE1,RBM38,MTRNR2L3,MIR4325,SPO11
SE_02_128900006 chr20:57370248-57509021 Sample_02_1289 Lung NCI-H526_p8-15 6 50 4619 262 40 157 2121 CTCFL,RAE1,RBM38,MTRNR2L3,MIR4325,SPO11
SE_02_104300140 chr20:57370399-57493529 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 140 72 4092 247 35 151 1394 RAE1,RBM38,CTCFL,MTRNR2L3,MIR4325,SPO11
SE_02_152900241 chr20:57370438-57476885 Sample_02_1529 Peripheral blood neutrophils_0BC75 241 36 3570 209 27 151 1313 RAE1,RBM38,CTCFL,MTRNR2L3,MIR4325,SPO11
SE_02_069200006 chr20:57370442-57509165 Sample_02_0692 Lung NCI-H526_no infection 6 53 4619 262 40 157 2121 CTCFL,RAE1,RBM38,MTRNR2L3,MIR4325,SPO11
SE_02_012800414 chr20:57371674-57439607 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 414 23 2291 146 12 118 1313 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_143201090 chr20:57372217-57415453 Sample_02_1432 Bone A673 STAG2 WT 1090 23 1521 103 3 109 1259 RAE1,RBM38,SPO11,MTRNR2L3
SE_01_008400571 chr20:57372500-57403788 Sample_01_0084 Spleen spleen 571 5 1046 74 1 80 816 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_077900063 chr20:57372858-57408985 Sample_02_0779 Lymphoma U2932 63 11 1260 84 1 90 1142 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_101701271 chr20:57372870-57425710 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1271 13 1824 123 9 112 1313 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_104600101 chr20:57373026-57502274 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 101 65 4250 250 39 156 1808 CTCFL,RAE1,RBM38,MTRNR2L3,SPO11
SE_02_122900209 chr20:57373882-57464514 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 209 37 3019 178 17 139 1261 RAE1,RBM38,SPO11,MTRNR2L3,CTCFL,PCK1
SE_02_104800056 chr20:57373912-57473613 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 56 40 3350 199 27 144 1260 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_032100617 chr20:57373948-57410901 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 617 5 1295 86 1 97 1206 RAE1,RBM38,SPO11,MTRNR2L3
SE_01_005300285 chr20:57374006-57401662 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 285 5 896 69 1 73 763 RAE1,RBM38,SPO11,MTRNR2L3
SE_00_004000569 chr20:57374087-57410819 Sample_00_0040 Spleen spleen_30y 569 6 1288 85 1 97 1206 RAE1,RBM38,SPO11,MTRNR2L3,TRNR2L3,RB38
SE_00_005500529 chr20:57374154-57403545 Sample_00_0055 Spleen spleen 34y 529 10 978 71 1 73 763 RAE1,RBM38,SPO11,MTRNR2L3
SE_00_005600619 chr20:57374281-57401645 Sample_00_0056 Sigmoid colon sigmoid colon 3y 619 10 884 68 1 73 763 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_104000059 chr20:57374298-57409873 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 59 26 1241 82 1 91 1206 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_089201455 chr20:57374477-57410231 Sample_02_0892 Heart left ventricle_LV1215 1455 9 1255 85 1 93 1195 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_115300451 chr20:57374570-57402106 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 451 3 899 68 1 73 741 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_119500615 chr20:57374780-57401220 Sample_02_1195 Brain GBM29 615 7 851 68 1 69 720 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_143301247 chr20:57374840-57415497 Sample_02_1433 Bone A673 STAG2 null 1247 19 1420 98 3 96 1150 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_118800151 chr20:57374942-57473653 Sample_02_1188 Brain GBM18 151 25 3309 197 27 138 1184 RAE1,RBM38,SPO11,MTRNR2L3
SE_01_009800906 chr20:57375051-57410635 Sample_01_0098 Heart left ventricle_51y 906 10 1243 84 1 91 1111 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_082601217 chr20:57375175-57400069 Sample_02_0826 Stomach gastric tumor 1217 13 778 65 1 67 633 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_074700561 chr20:57375420-57413490 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 561 19 1347 95 1 91 1034 RAE1,RBM38,SPO11,MTRNR2L3
SE_00_004600529 chr20:57375470-57410281 Sample_00_0046 Heart right ventricle_34y 529 14 1218 84 1 90 1024 RAE1,RBM38,SPO11,MTRNR2L3,BMP7
SE_02_119301056 chr20:57375485-57400735 Sample_02_1193 Brain GBM27 1056 6 803 66 1 67 580 RAE1,RBM38,SPO11,MTRNR2L3
SE_02_119400882 chr20:57375842-57401642 Sample_02_1194 Brain GBM28 882 9 832 66 1 67 569 RAE1,RBM38,SPO11,MTRNR2L3
SE_01_004000251 chr20:57378910-57410837 Sample_01_0040 Haematopoietic and lymphoid tissue Karpas-422 251 5 1138 73 0 86 907 RBM38,RAE1,SPO11,MTRNR2L3
SE_02_074600007 chr20:57379514-57499274 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 7 31 3963 233 37 138 1282 CTCFL,RBM38,RAE1,MTRNR2L3,SPO11
Genomic distribution of SEs associated with SPO11
Genome Browser

The strength of the tissue affected by the gene

Expression of SPO11

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)