SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000269959
Gene: SPACA6P-AS Gene type: lncRNA
Strand: - External links:
Genomic region: chr19:51685363-51693456 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153000439 chr19:51606535-51655427 Sample_02_1530 Peripheral blood neutrophils_0BA0X 439 10 1343 181 5 0 1652 SIGLEC5,SIGLEC14,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,SPACA6P,LINC01530,ZNF175,FPR2,FPR1,HAS1
SE_02_092800397 chr19:51618917-51652892 Sample_02_0928 Peripheral blood neutrophils_Ecoli 397 11 918 112 4 0 1456 SIGLEC5,SIGLEC14,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,SPACA6P,LINC01530,ZNF175,FPR2,FPR1,HAS1
SE_02_152900926 chr19:51619072-51656412 Sample_02_1529 Peripheral blood neutrophils_0BC75 926 11 1030 145 4 0 1456 SIGLEC5,SIGLEC14,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,SPACA6P,LINC01530,ZNF175,FPR2,FPR1,HAS1
SE_02_086800239 chr19:51703971-51744776 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 239 21 1283 146 3 119 1128 SPACA6P,HAS1,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,FPR1,FPR2
SE_02_127901075 chr19:51718534-51730698 Sample_02_1279 Bone Mesenchymal stem cells 1075 1 374 38 1 66 301 HAS1,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,FPR1,SPACA6P,FPR2
SE_02_076300476 chr19:51724340-51752744 Sample_02_0763 Podocyte podocyte_DEX 476 5 953 124 3 16 344 FPR1,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR2,FPR3
SE_02_158200342 chr19:51724828-51745873 Sample_02_1582 Renal OS-RC-2 342 12 717 94 2 16 32 FPR1,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR2,FPR3,SIGLEC14,ZNF577
SE_02_158100695 chr19:51725079-51744496 Sample_02_1581 Renal OS-LM1 695 9 660 88 2 16 0 SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,FPR1,SPACA6P,FPR2
SE_02_153000011 chr19:51727985-51783510 Sample_02_1530 Peripheral blood neutrophils_0BA0X 11 7 1644 212 5 0 697 FPR1,FPR2,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR3,ZNF766,SIGLEC14,ZNF577,ZNF175,ZNF613,ZNF615
SE_02_092700053 chr19:51731753-51777985 Sample_02_0927 Peripheral blood neutrophils_US 53 10 1380 165 5 0 697 FPR1,FPR2,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR3,ZNF766,SIGLEC14,ZNF577,ZNF175,ZNF613,ZNF615
SE_02_153100007 chr19:51732222-51778566 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 7 11 1373 165 5 0 697 FPR1,FPR2,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR3,ZNF766,SIGLEC14,ZNF577,ZNF175,ZNF613,ZNF615
SE_02_152900921 chr19:51733175-51741306 Sample_02_1529 Peripheral blood neutrophils_0BC75 921 1 259 38 1 0 0 SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,FPR1,SPACA6P,FPR2,ZNF766,SIGLEC14,ZNF577,FPR3,ZNF175,ZNF613,ZNF615
SE_02_127901597 chr19:51733634-51745160 Sample_02_1279 Bone Mesenchymal stem cells 1597 1 372 47 2 0 0 SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,FPR1,SPACA6P,FPR2,FPR3
SE_02_092800388 chr19:51741658-51756358 Sample_02_0928 Peripheral blood neutrophils_Ecoli 388 1 474 53 2 0 344 FPR1,SPACA6P-AS,MIRLET7E,MIR99B,MIR125A,HAS1,SPACA6P,FPR2,FPR3,SIGLEC14,ZNF577,ZNF175,ZNF613,ZNF615
Genomic distribution of SEs associated with SPACA6P-AS
Genome Browser

The strength of the tissue affected by the gene

Expression of SPACA6P-AS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)