Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000242808 |
| Gene: | SOX2-OT | Gene type: | lncRNA |
| Strand: | + | External links: |
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| Genomic region: | chr3:180989762-181836880 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_082500076 | chr3:181547289-181576093 |
Sample_02_0825 | Stomach | SNU484 | 76 | 1 | 640 | 1 | 5 | 145 | 45 | SOX2-OT |
| SE_02_118200190 | chr3:181549174-181575314 |
Sample_02_1182 | Brain | GBM11 | 190 | 8 | 582 | 1 | 5 | 145 | 45 | SOX2-OT |
| SE_02_117500482 | chr3:181549324-181572431 |
Sample_02_1175 | Brain | GBM03 | 482 | 9 | 517 | 1 | 5 | 119 | 45 | SOX2-OT |
| SE_02_096900470 | chr3:181549411-181584895 |
Sample_02_0969 | Brain | H3.3K27M_PL637 | 470 | 19 | 807 | 1 | 5 | 165 | 45 | SOX2-OT |
| SE_02_095600123 | chr3:181549415-181575032 |
Sample_02_0956 | Brain | IDH1_2658 | 123 | 6 | 572 | 1 | 5 | 145 | 45 | SOX2-OT |
| SE_02_119000429 | chr3:181549717-181578891 |
Sample_02_1190 | Brain | GBM24 | 429 | 11 | 649 | 1 | 5 | 147 | 45 | SOX2-OT |
| SE_02_097900648 | chr3:181549784-181570171 |
Sample_02_0979 | Brain | JN14-BS1_H3.3K27M | 648 | 10 | 450 | 0 | 5 | 117 | 45 | SOX2-OT |
| SE_02_085700971 | chr3:181553356-181575557 |
Sample_02_0857 | Glioblastoma | Glioblastoma neurosphere cell_HF-3035 | 971 | 8 | 493 | 1 | 5 | 143 | 45 | SOX2-OT |
| SE_02_118900077 | chr3:181553492-181574530 |
Sample_02_1189 | Brain | GBM22 | 77 | 8 | 461 | 1 | 5 | 142 | 45 | SOX2-OT |
| SE_02_095500122 | chr3:181554459-181574381 |
Sample_02_0955 | Brain | IDH1_2469 | 122 | 9 | 441 | 1 | 5 | 137 | 45 | SOX2-OT |
| SE_02_141700428 | chr3:181554927-181570789 |
Sample_02_1417 | Brain | SF7761 | 428 | 5 | 342 | 0 | 4 | 109 | 45 | SOX2-OT |
| SE_02_119300375 | chr3:181555025-181579072 |
Sample_02_1193 | Brain | GBM27 | 375 | 6 | 535 | 1 | 4 | 139 | 45 | SOX2-OT |
| SE_02_119800973 | chr3:181555084-181595151 |
Sample_02_1198 | Brain | GBM34 | 973 | 20 | 936 | 1 | 5 | 159 | 45 | SOX2-OT |
| SE_02_121000234 | chr3:181561156-181574452 |
Sample_02_1210 | Brain | GBM17 | 234 | 12 | 273 | 1 | 0 | 125 | 45 | SOX2-OT |
| SE_02_082500321 | chr3:181576329-181586622 |
Sample_02_0825 | Stomach | SNU484 | 321 | 1 | 241 | 0 | 0 | 22 | 0 | SOX2-OT |
Genomic distribution of SEs associated with SOX2-OT