SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000212283
Gene: SNORD89 Gene type: snoRNA
Strand: - External links:
Genomic region: chr2:101272936-101273049 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_076800097 chr2:101113121-101257684 Sample_02_0768 Ovary SKOV3 97 55 3837 264 5 163 902 TBC1D8,CNOT11,SNORD89
SE_02_077500414 chr2:101183069-101262139 Sample_02_0775 Pancreas EndoC-BH1_SE 414 29 2098 105 2 46 297 CNOT11,TBC1D8,RNF149,MIR5696,SNORD89
SE_02_080800047 chr2:101198629-101271133 Sample_02_0808 Ovary RMG1_ARID1A KO 47 46 1895 104 3 78 578 CNOT11,TBC1D8,RNF149,MIR5696,SNORD89
SE_02_008600696 chr2:101204665-101269230 Sample_02_0086 Pancreas CAPAN1 696 6 1704 93 3 60 461 C2ORF29,RNF149,SNORD89
SE_02_158000193 chr2:101205774-101270956 Sample_02_1580 Renal 786-O 193 18 1709 94 3 74 565 CNOT11,RNF149,MIR5696,SNORD89
SE_02_025700116 chr2:101217669-101269210 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 116 4 1354 67 1 60 458 C2ORF29,RNF149,SNORD89
SE_02_038100236 chr2:101217903-101270598 Sample_02_0381 Heart purified cardiomyocyte WT 236 8 1372 67 1 74 565 C2ORF29,RNF149,SNORD89
SE_02_038200214 chr2:101218605-101270729 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 214 6 1356 68 1 74 565 C2ORF29,RNF149,SNORD89
SE_02_157900507 chr2:101218770-101269599 Sample_02_1579 Renal 786-M1A 507 10 1329 67 1 73 488 CNOT11,RNF149,MIR5696,SNORD89
SE_02_042800044 chr2:101219095-101270734 Sample_02_0428 Kidney 12364284_VHL- 44 14 1343 67 1 74 565 C2ORF29,RNF149,SNORD89
SE_02_000800047 chr2:101223056-101255166 Sample_02_0008 Kidney 786-O_empty_vector 47 15 862 43 0 29 242 C2ORF29,SNORD89
SE_02_026700225 chr2:101223056-101268347 Sample_02_0267 Kidney 786-O 225 8 1186 62 1 53 435 C2ORF29,RNF149,SNORD89
SE_02_042900101 chr2:101223772-101268912 Sample_02_0429 Kidney 12364284_VHL+ 101 15 1175 63 1 53 438 C2ORF29,RNF149,SNORD89
SE_02_000900400 chr2:101223775-101246772 Sample_02_0009 Kidney 786-O_wtVHL 400 6 634 30 0 0 0 C2ORF29,SNORD89
SE_02_001200476 chr2:101223775-101269720 Sample_02_0012 Kidney 786-O_non-targeting 476 10 1186 63 1 73 496 C2ORF29,RNF149,SNORD89
SE_02_043000061 chr2:101223775-101270964 Sample_02_0430 Kidney 12364284 61 14 1208 65 1 74 565 C2ORF29,RNF149,SNORD89
SE_02_046700215 chr2:101224162-101239508 Sample_02_0467 Kidney 786-O_control 215 4 436 18 0 0 0 SNORD89,CNOT11
SE_02_032200343 chr2:101229221-101269276 Sample_02_0322 Colon Caco-2 343 5 1034 56 1 63 463 C2ORF29,RNF149,SNORD89
SE_02_026800762 chr2:101229838-101250676 Sample_02_0268 Kidney A-498 762 6 570 24 0 0 0 C2ORF29,SNORD89
SE_02_091001053 chr2:101229941-101267311 Sample_02_0910 Heart left ventricle_DCM_LV1275 1053 16 979 53 1 51 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_090701086 chr2:101229951-101268523 Sample_02_0907 Heart left ventricle_DCM_LV1223 1086 20 1000 54 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_047600558 chr2:101230212-101268282 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 558 8 993 54 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_092500271 chr2:101230331-101271085 Sample_02_0925 Heart fetal heart_PCW17_12570 271 14 1044 59 1 74 575 CNOT11,RNF149,MIR5696,SNORD89,TBC1D8
SE_02_001000969 chr2:101230591-101269135 Sample_02_0010 Kidney A-498_emptyvector 969 6 999 55 1 59 454 C2ORF29,RNF149,SNORD89
SE_02_092400292 chr2:101230601-101270474 Sample_02_0924 Heart fetal heart_PCW10_12569 292 11 1022 55 1 74 563 CNOT11,RNF149,MIR5696,SNORD89,TBC1D8
SE_02_077600270 chr2:101230953-101254891 Sample_02_0776 Pancreas EndoC-BH1 270 4 649 34 0 29 242 CNOT11,SNORD89,TBC1D8
SE_02_067200153 chr2:101231678-101268570 Sample_02_0672 Endometrium endometrium cancer_DSG 153 19 965 54 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_01_010100609 chr2:101232334-101268829 Sample_01_0101 Pancreas pancreas_54y 609 10 959 53 1 53 435 CNOT11,RNF149,MIR5696,SNORD89,TBC1D8
SE_02_081900435 chr2:101232418-101268488 Sample_02_0819 Ovary Mucinous ovarian cancer 435 8 948 52 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_047700984 chr2:101232538-101268354 Sample_02_0477 Colon intestinal epithelial organoids_139a 984 15 946 52 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_067400149 chr2:101232681-101268306 Sample_02_0674 Endometrium E1_FA 149 17 944 52 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_028500427 chr2:101233372-101254954 Sample_02_0285 Liver HuH7_untreat 427 3 584 32 0 29 242 C2ORF29,SNORD89
SE_02_020400261 chr2:101233411-101245166 Sample_02_0204 Stomach IM95 261 4 340 17 0 0 0 C2ORF29,SNORD89
SE_02_136700700 chr2:101233564-101268564 Sample_02_1367 Pancreas Capan1-untreated 700 10 907 52 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_02_070900786 chr2:101233585-101245612 Sample_02_0709 Pancreas hT85_organoid 786 3 348 17 0 0 0 SNORD89,CNOT11
SE_02_125800701 chr2:101233821-101269309 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 701 9 916 52 1 69 466 CNOT11,RNF149,MIR5696,SNORD89
SE_02_035400898 chr2:101233863-101268973 Sample_02_0354 Colon Colo205 898 6 912 52 1 53 445 C2ORF29,RNF149,SNORD89
SE_02_051100084 chr2:101234323-101246738 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 84 5 358 18 0 0 0 SNORD89,CNOT11
SE_02_140800312 chr2:101234664-101250284 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 312 6 439 18 0 0 0 SNORD89,CNOT11
SE_02_050900094 chr2:101235559-101246627 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 94 4 317 16 0 0 0 SNORD89,CNOT11
SE_02_051200053 chr2:101235632-101245737 Sample_02_0512 Prostate LNCaP95_shARv7_DHT 53 6 294 14 0 0 0 SNORD89,CNOT11
SE_02_051000224 chr2:101235676-101246526 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 224 3 312 16 0 0 0 SNORD89,CNOT11
SE_02_092100846 chr2:101236695-101270766 Sample_02_0921 Heart embryonic heart_CS22 846 17 858 49 1 74 565 CNOT11,RNF149,MIR5696,SNORD89,TBC1D8
SE_02_143400647 chr2:101237068-101268090 Sample_02_1434 Trophoblast trophoblast stem cells 647 5 803 46 1 53 435 CNOT11,RNF149,MIR5696,SNORD89
SE_01_006800218 chr2:101237304-101246691 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 218 2 267 14 0 0 0 C2ORF29,SNORD89
SE_02_051400090 chr2:101237452-101246105 Sample_02_0514 Prostate LNCaP95_shARfl_DHT 90 5 249 13 0 0 0 SNORD89,CNOT11
SE_02_051300107 chr2:101237475-101246476 Sample_02_0513 Prostate LNCaP95_shARfl_ETOH 107 5 256 13 0 0 0 SNORD89,CNOT11
SE_02_049400435 chr2:101237822-101248830 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 435 4 301 14 0 0 0 SNORD89,CNOT11
SE_02_049500578 chr2:101237948-101241575 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 578 2 102 4 0 0 0 SNORD89,CNOT11
SE_02_075700801 chr2:101238390-101247212 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 801 2 236 12 0 0 0 SNORD89,CNOT11
SE_02_075400399 chr2:101238446-101249411 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 399 4 292 13 0 0 0 SNORD89,CNOT11
SE_02_049300519 chr2:101238454-101246517 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 519 2 221 12 0 0 0 SNORD89,CNOT11
SE_02_104801834 chr2:101278200-101313715 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1834 7 919 56 3 87 445 RNF149,MIR5696,CNOT11,SNORD89
SE_00_000900982 chr2:101299239-101312559 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 982 3 382 29 1 41 259 RNF149,C2ORF29,SNORD89
SE_02_153000361 chr2:101299240-101342290 Sample_02_1530 Peripheral blood neutrophils_0BA0X 361 11 1117 84 3 65 259 RNF149,MIR5696,CNOT11,SNORD89,CREG2,TBC1D8
SE_01_008401149 chr2:101299529-101312285 Sample_01_0084 Spleen spleen 1149 3 374 27 1 41 259 RNF149,C2ORF29,SNORD89
SE_02_092700202 chr2:101299637-101342252 Sample_02_0927 Peripheral blood neutrophils_US 202 11 1106 84 3 65 259 RNF149,MIR5696,CNOT11,SNORD89,CREG2,TBC1D8
SE_02_152900336 chr2:101299719-101342236 Sample_02_1529 Peripheral blood neutrophils_0BC75 336 10 1101 84 3 65 259 RNF149,MIR5696,CNOT11,SNORD89,CREG2,TBC1D8
SE_01_005200402 chr2:101299791-101312944 Sample_01_0052 Blood neutrophil 402 2 373 27 1 40 259 RNF149,C2ORF29,SNORD89
SE_02_014800314 chr2:101300137-101309288 Sample_02_0148 Blood CD8_T_cells 314 3 278 22 1 37 234 RNF149,C2ORF29,SNORD89
SE_02_092800319 chr2:101300512-101342369 Sample_02_0928 Peripheral blood neutrophils_Ecoli 319 10 1085 82 3 63 259 RNF149,MIR5696,CNOT11,SNORD89,CREG2,TBC1D8
SE_02_082601226 chr2:101300852-101311483 Sample_02_0826 Stomach gastric tumor 1226 6 314 24 1 39 259 RNF149,MIR5696,CNOT11,SNORD89
SE_00_000800564 chr2:101303835-101312342 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 564 2 233 13 1 35 259 RNF149,SNORD89
SE_02_045400512 chr2:101304675-101341082 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 512 7 918 64 1 58 259 RNF149,MIR5696,SNORD89,CREG2
SE_02_034800559 chr2:101304957-101342409 Sample_02_0348 Peripheral blood CUTLL1_wild-type 559 4 945 70 3 58 259 RNF149,CREG2,SNORD89
SE_02_065000871 chr2:101305086-101308770 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 871 1 104 10 1 29 193 RNF149,MIR5696,SNORD89
SE_02_064900800 chr2:101305126-101308727 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 800 1 101 10 1 29 185 RNF149,MIR5696,SNORD89
SE_02_081600895 chr2:101305137-101311856 Sample_02_0816 Ovary Clear cell ovarian cancer 895 1 187 13 1 34 259 RNF149,MIR5696,SNORD89
SE_02_059200223 chr2:101305196-101309113 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 223 3 114 10 1 32 233 RNF149,MIR5696,SNORD89
SE_02_157300875 chr2:101305317-101312113 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 875 2 186 13 1 33 259 RNF149,MIR5696,SNORD89
SE_02_064501714 chr2:101305486-101309175 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1714 1 108 10 1 31 233 RNF149,MIR5696,SNORD89
SE_02_059100519 chr2:101305544-101311486 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 519 2 168 13 1 33 259 RNF149,MIR5696,SNORD89,RPL31,RFX8,CNOT11
SE_02_064600893 chr2:101305550-101309175 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 893 2 108 10 1 31 233 RNF149,MIR5696,SNORD89
SE_00_005500901 chr2:101305619-101311931 Sample_00_0055 Spleen spleen 34y 901 4 178 13 1 33 259 RNF149,MIR5696,SNORD89,CNOT11
SE_02_131300312 chr2:101305650-101341094 Sample_02_1313 Brain hMGLs_CD33_SNP 312 10 891 64 1 57 259 RNF149,MIR5696,SNORD89,CREG2
SE_02_059300524 chr2:101306326-101311879 Sample_02_0593 Fetal spleenocytes fetal naive T cells 524 2 147 8 0 28 259 RNF149,MIR5696,SNORD89,CNOT11
SE_02_133000817 chr2:101306374-101343514 Sample_02_1330 Blood AMU-AML1 817 13 928 67 2 53 259 RNF149,MIR5696,SNORD89,CREG2
SE_02_104603427 chr2:101313057-101381314 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3427 16 1752 164 7 71 332 CREG2,RNF149,MIR5696,SNORD89
Genomic distribution of SEs associated with SNORD89
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD89

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)