SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000239127
Gene: SNORD125 Gene type: snoRNA
Strand: - External links:
Genomic region: chr22:29333163-29333258 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138200430 chr22:29260024-29287447 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 430 11 851 44 1 118 1240 RHBDD3,EWSR1,GAS2L1,MIR3653,SNORD125,RASL10A
SE_02_101700636 chr22:29260196-29283940 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 636 4 756 39 1 109 1138 RHBDD3,EWSR1,GAS2L1,MIR3653,SNORD125,RASL10A
SE_02_142901172 chr22:29265768-29288967 Sample_02_1429 Blood GM12878_WT 1172 4 693 37 0 106 730 RHBDD3,EWSR1,GAS2L1,MIR3653,SNORD125,RASL10A,EMID1
SE_02_141600957 chr22:29266213-29294905 Sample_02_1416 Brain SF9402 957 6 825 47 1 207 1040 RHBDD3,EWSR1,GAS2L1,MIR3653,SNORD125,RASL10A
SE_02_122400913 chr22:29267265-29301635 Sample_02_1224 Bone marrow normal plasma cell 913 8 1026 61 1 257 1544 RHBDD3,EWSR1,GAS2L1,MIR3653,SNORD125,RASL10A
SE_02_065700542 chr22:29273759-29299953 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 542 10 735 52 1 203 1045 EWSR1,GAS2L1,MIR3653,RHBDD3,SNORD125,RASL10A
SE_02_111100807 chr22:29287441-29313629 Sample_02_1111 Other HGrC1_SMAD2/3KO 807 8 733 50 1 320 2281 RASL10A,EWSR1,GAS2L1,MIR3653,RHBDD3,SNORD125
SE_02_119700864 chr22:29301146-29312629 Sample_02_1197 Brain GBM33 864 3 330 21 0 121 1164 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_119200540 chr22:29301896-29318702 Sample_02_1192 Brain GBM26 540 7 451 30 0 168 1794 RASL10A,GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125
SE_02_143201628 chr22:29302352-29312632 Sample_02_1432 Bone A673 STAG2 WT 1628 6 291 19 0 121 1166 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_00_004600793 chr22:29302480-29311976 Sample_00_0046 Heart right ventricle_34y 793 5 271 19 0 102 986 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_146001363 chr22:29302746-29312868 Sample_02_1460 Blood Mutz-3 1363 3 288 21 0 127 1213 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_097200508 chr22:29302760-29312426 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 508 2 278 19 0 110 1110 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_143301021 chr22:29302818-29312689 Sample_02_1433 Bone A673 STAG2 null 1021 3 281 19 0 123 1179 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_126900512 chr22:29302837-29312037 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 512 2 265 19 0 105 999 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_00_002400801 chr22:29304454-29308081 Sample_00_0024 Embryo mesendoderm 801 2 102 11 0 16 324 GAS2L1,MIR3653,RASL10A,RHBDD3,EWSR1,SNORD125
SE_02_133400318 chr22:29305568-29312308 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 318 2 207 15 0 106 1080 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_064200562 chr22:29305733-29311591 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 562 3 183 13 0 90 868 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_146900277 chr22:29305742-29312803 Sample_02_1469 Umbilical Vein HUVEC 277 1 215 15 0 126 1195 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_132100817 chr22:29305772-29311822 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 817 3 188 13 0 95 940 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_027401145 chr22:29305858-29312387 Sample_02_0274 Endometriosis hTERT_KD 1145 1 204 14 0 108 1098 GAS2L1,MIR3653,RASL10A,RHBDD3,EWSR1,SNORD125
SE_02_064000485 chr22:29305861-29311777 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 485 3 186 12 0 94 932 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_132200446 chr22:29305897-29311797 Sample_02_1322 Connective Tissue HT1080_WT 446 3 185 12 0 95 935 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_064300748 chr22:29305971-29311596 Sample_02_0643 Mammary gland MDA-MB-436 748 3 179 12 0 90 869 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_132000522 chr22:29306000-29311921 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 522 3 187 13 0 101 972 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_102500830 chr22:29306028-29312083 Sample_02_1025 Esophagus KYSE150 830 3 190 14 0 105 1009 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_044800750 chr22:29306038-29313124 Sample_02_0448 Bone MNNG 750 2 219 16 0 127 1261 RASL10A,GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125
SE_02_114800432 chr22:29306047-29311794 Sample_02_1148 Kidney WT 9-12_control_vehicle 432 2 182 12 0 95 935 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_147100460 chr22:29306048-29312500 Sample_02_1471 Blood Outgrowth Endothelia BOEC 460 1 202 14 0 116 1134 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_126401064 chr22:29306130-29312548 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1064 1 202 14 0 116 1143 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_010600343 chr22:29306249-29313868 Sample_02_0106 Skin NHEK_M 343 4 229 14 0 146 1434 GAS2L1,RASL10A,MIR3653,RHBDD3,EWSR1,SNORD125
SE_02_126301089 chr22:29306290-29312614 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1089 1 197 12 0 120 1160 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_126700714 chr22:29306299-29312398 Sample_02_1267 Bone Im-GCT-4072_G34W 714 1 193 12 0 109 1100 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_105400755 chr22:29306337-29312529 Sample_02_1054 Esophagus SKGT4 755 3 194 12 0 116 1137 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_126100523 chr22:29306342-29312020 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 523 3 181 12 0 105 995 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_043900308 chr22:29306357-29311943 Sample_02_0439 Bone Hu09 308 3 176 11 0 101 979 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_044100371 chr22:29306358-29312104 Sample_02_0441 Bone M112 371 2 180 12 0 105 1017 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_02_103602518 chr22:29311240-29312484 Sample_02_1036 Mammary gland HCC70_XY018 2518 1 32 2 0 40 352 GAS2L1,MIR3653,RHBDD3,EWSR1,SNORD125,RASL10A
SE_01_002200160 chr22:29333896-29347125 Sample_01_0022 Prostate C4-2B 160 3 382 32 0 39 627 AP1B1,GAS2L1,RASL10A,MIR3653,SNORD125
SE_02_016900333 chr22:29334087-29386679 Sample_02_0169 Prostate LNCaP_R1881 333 7 1434 137 3 153 1556 AP1B1,GAS2L1,RASL10A,MIR3653,SNORD125
SE_02_016200156 chr22:29334136-29347748 Sample_02_0162 Prostate C4-2B_vehicle_24h 156 4 387 33 0 39 614 AP1B1,GAS2L1,RASL10A,MIR3653,SNORD125
SE_02_066400131 chr22:29334142-29385139 Sample_02_0664 Prostate LNCaP_DMSO 131 6 1399 135 3 149 1543 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_140700508 chr22:29334213-29363257 Sample_02_1407 Prostate LNCaP_R1881 4h 508 4 843 67 1 118 1461 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_016800533 chr22:29334372-29386858 Sample_02_0168 Prostate LNCaP 533 7 1426 138 3 148 1495 AP1B1,GAS2L1,RASL10A,MIR3653,SNORD125
SE_02_016300270 chr22:29334973-29347603 Sample_02_0163 Prostate C4-2B_SR2211_24h 270 8 356 31 0 31 512 AP1B1,GAS2L1,RASL10A,MIR3653,SNORD125
SE_02_046501359 chr22:29335728-29383378 Sample_02_0465 Adipose subcutaneous adipocytes 1359 14 1317 126 3 141 1441 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_119200321 chr22:29336987-29386630 Sample_02_1192 Brain GBM26 321 20 1355 132 3 145 1441 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_121000535 chr22:29337238-29370330 Sample_02_1210 Brain GBM17 535 7 969 83 1 120 1441 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_080800421 chr22:29337742-29394895 Sample_02_0808 Ovary RMG1_ARID1A KO 421 27 1517 145 3 158 1588 AP1B1,RFPL1S,GAS2L1,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_096700436 chr22:29338436-29375843 Sample_02_0967 Brain H3.3K27M_JN57 436 14 1054 93 1 125 1441 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_066300468 chr22:29339947-29350542 Sample_02_0663 Thyroid TT 468 1 283 23 0 28 537 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_108200372 chr22:29342633-29386284 Sample_02_1082 Retina retina 372 15 1167 114 3 116 929 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_108300271 chr22:29342706-29395603 Sample_02_1083 Macula macula 271 10 1368 132 3 133 1076 AP1B1,RFPL1S,GAS2L1,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_119000379 chr22:29342715-29386630 Sample_02_1190 Brain GBM24 379 16 1168 115 3 119 929 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653
SE_02_119100630 chr22:29342777-29389351 Sample_02_1191 Brain GBM25 630 17 1223 119 3 133 1076 AP1B1,GAS2L1,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_103100224 chr22:29343789-29394638 Sample_02_1031 Head and neck SCC1 contol 224 20 1318 130 3 133 1076 AP1B1,RFPL1S,GAS2L1,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_103200272 chr22:29345158-29396943 Sample_02_1032 Head and neck SCC1 JQ1 272 17 1334 134 3 133 1076 AP1B1,RFPL1S,GAS2L1,MIR3653,RFPL1,SNORD125,RASL10A
SE_01_005500306 chr22:29345937-29393500 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 306 5 1239 124 3 133 1076 AP1B1,GAS2L1,RFPL1S,MIR3653,RASL10A,RFPL1,SNORD125
SE_02_092901130 chr22:29356928-29386532 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1130 12 771 85 2 68 343 AP1B1,RASL10A,GAS2L1,SNORD125,MIR3653,EWSR1
SE_02_093000857 chr22:29357891-29388584 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 857 20 790 86 2 74 433 AP1B1,RASL10A,RFPL1,SNORD125,MIR3653,EWSR1,GAS2L1
SE_02_146900722 chr22:29358533-29386386 Sample_02_1469 Umbilical Vein HUVEC 722 8 728 82 2 65 342 AP1B1,RASL10A,SNORD125,MIR3653,GAS2L1
SE_02_151800526 chr22:29358853-29386282 Sample_02_1518 Umbilical vein HUVEC_Scr 526 15 716 82 2 55 281 AP1B1,RASL10A,SNORD125,MIR3653,GAS2L1
SE_02_155301103 chr22:29359397-29395546 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1103 12 909 100 2 65 374 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_149201404 chr22:29359990-29393485 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1404 13 843 98 2 54 306 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_082601161 chr22:29360065-29394576 Sample_02_0826 Stomach gastric tumor 1161 14 863 99 2 54 296 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_083101105 chr22:29360464-29386227 Sample_02_0831 Umblical vein HUVECs_TNF0min 1105 13 679 82 2 37 138 AP1B1,RASL10A,SNORD125,MIR3653,GAS2L1
SE_02_104301727 chr22:29361168-29393669 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1727 9 810 95 2 53 285 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_082200425 chr22:29362426-29383950 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 425 2 564 70 2 34 138 AP1B1,RASL10A,SNORD125,MIR3653
SE_02_074000914 chr22:29362477-29376227 Sample_02_0740 Muscle RH3 914 6 366 40 0 19 138 AP1B1,RASL10A,SNORD125,MIR3653
SE_02_131500268 chr22:29362769-29394939 Sample_02_1315 Brain hMGLs_INPP5D SNP 268 11 785 88 2 52 285 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_046000630 chr22:29362938-29393738 Sample_02_0460 Blood ME-1_I-10-49_6h 630 10 749 88 2 51 261 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_131600254 chr22:29363013-29394624 Sample_02_1316 Brain hMGLs_TREM2-R47H 254 8 766 87 2 51 247 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_157301136 chr22:29363103-29389292 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1136 9 646 75 2 49 239 AP1B1,RASL10A,RFPL1,SNORD125,MIR3653
SE_02_083501258 chr22:29363154-29394391 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1258 5 759 87 2 49 226 AP1B1,RFPL1S,MIR3653,RFPL1,SNORD125,RASL10A
SE_02_075000772 chr22:29363170-29389384 Sample_02_0750 Lymphoma Rec-1_GSI 772 7 646 75 2 49 222 AP1B1,RASL10A,RFPL1,SNORD125,MIR3653
SE_02_135000276 chr22:29363266-29389344 Sample_02_1350 Leukophereses leukophereses_p456 276 6 642 74 2 49 202 AP1B1,RASL10A,RFPL1,SNORD125,MIR3653
SE_02_082300343 chr22:29363271-29384027 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 343 5 533 65 2 31 54 AP1B1,RASL10A,SNORD125,MIR3653
SE_02_134300147 chr22:29363330-29383369 Sample_02_1343 Leukophereses leukophereses_p195 147 3 519 63 2 31 53 AP1B1,RASL10A,SNORD125,MIR3653
SE_02_077501603 chr22:29371490-29406361 Sample_02_0775 Pancreas EndoC-BH1_SE 1603 9 779 94 3 37 147 AP1B1,RFPL1,RFPL1S,SNORD125,MIR3653
SE_02_124800610 chr22:29375580-29383557 Sample_02_1248 Bladder RT4 610 3 201 29 2 16 0 AP1B1,SNORD125,MIR3653
SE_02_131300597 chr22:29382829-29395024 Sample_02_1313 Brain hMGLs_CD33_SNP 597 5 265 23 0 22 147 AP1B1,RFPL1,RFPL1S,SNORD125,MIR3653
SE_02_131700590 chr22:29383003-29394608 Sample_02_1317 Brain hMGLs_SORL1-KO 590 4 251 23 0 21 147 AP1B1,RFPL1,RFPL1S,SNORD125,MIR3653
Genomic distribution of SEs associated with SNORD125
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD125

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)