SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000163877
Gene: SNIP1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:37534449-37554293 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_016900178 chr1:37449220-37509811 Sample_02_0169 Prostate LNCaP_R1881 178 11 1674 150 3 251 2344 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_000400134 chr1:37451727-37509521 Sample_03_0004 Lung A549_dexamethasone_4h 134 6 1593 141 3 217 2321 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_000800225 chr1:37451802-37509653 Sample_03_0008 Lung A549_dexamethasone_7h 225 5 1593 141 3 218 2336 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_000900141 chr1:37451811-37509914 Sample_03_0009 Lung A549_dexamethasone_3h 141 5 1607 143 3 218 2344 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_001000191 chr1:37451886-37508887 Sample_03_0010 Lung A549_dexamethasone_1h 191 7 1570 138 3 209 2272 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_001400091 chr1:37451974-37509897 Sample_03_0014 Lung A549_dexamethasone_2h 91 7 1600 142 3 218 2344 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_03_001500225 chr1:37452010-37509054 Sample_03_0015 Lung A549_dexamethasone_8h 225 8 1570 140 3 209 2272 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_016800055 chr1:37460261-37509415 Sample_02_0168 Prostate LNCaP 55 5 1342 121 3 202 2002 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_016300031 chr1:37462068-37508649 Sample_02_0163 Prostate C4-2B_SR2211_24h 31 16 1266 113 3 199 1970 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_017000215 chr1:37462611-37509807 Sample_02_0170 Prostate LNCaP_R1881_DOX 215 6 1286 116 3 208 2042 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_000200140 chr1:37463569-37515914 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 140 6 1435 140 3 235 2396 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_01_008000076 chr1:37464375-37515991 Sample_01_0080 Prostate prostate 76 5 1426 140 3 235 2396 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_024600090 chr1:37464410-37515960 Sample_02_0246 Mammary gland MCF-7_estradiol 90 5 1423 139 3 235 2396 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_016200048 chr1:37464466-37509322 Sample_02_0162 Prostate C4-2B_vehicle_24h 48 20 1236 108 3 202 1991 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_01_002200044 chr1:37464494-37507316 Sample_01_0022 Prostate C4-2B 44 11 1190 103 3 199 1970 ZC3H12A,MEAF6,DNALI1,SNIP1
SE_02_025700088 chr1:37470810-37504541 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 88 2 960 76 3 192 1902 ZC3H12A,MEAF6,SNIP1
SE_02_138800590 chr1:37570302-37592676 Sample_02_1388 Peripheral blood JB6_ALK+ 590 7 582 57 0 103 462 GNL2,SNIP1,DNALI1,RSPO1
SE_02_104603393 chr1:37602105-37628701 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3393 9 767 54 2 80 617 RSPO1,SNIP1,GNL2,DNALI1
Genomic distribution of SEs associated with SNIP1
Genome Browser

The strength of the tissue affected by the gene

Expression of SNIP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)