SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000185669
Gene: SNAI3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:88677688-88686507 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138100477 chr16:88576544-88659708 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 477 27 3426 226 8 223 5615 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_104000023 chr16:88578181-88653372 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 23 43 3060 198 7 169 4402 ZC3H18,MVD,IL17C,CYBA,SNAI3-AS1,SNAI3
SE_02_082600473 chr16:88587413-88654682 Sample_02_0826 Stomach gastric tumor 473 23 2763 191 7 165 4413 ZC3H18,MVD,IL17C,CYBA,RNF166,SNAI3-AS1,SNAI3
SE_01_008400321 chr16:88589248-88654227 Sample_01_0084 Spleen spleen 321 11 2680 185 7 154 4312 ZC3H18,CYBA,IL17C,MVD,SNAI3,MGC23284,RNF166
SE_02_073900537 chr16:88596029-88658632 Sample_02_0739 Blood Nalm6 537 17 2621 185 8 188 5205 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_057300272 chr16:88597679-88658280 Sample_02_0573 Blood Nalm6_1 272 14 2543 179 8 188 5179 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_055200298 chr16:88607601-88659907 Sample_02_0552 Other SYO1 shCt 298 13 2277 148 8 167 5047 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_045500550 chr16:88615086-88636969 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 550 9 878 53 5 69 1306 ZC3H18,IL17C,SNAI3-AS1,SNAI3,CYBA,MVD
SE_02_045400821 chr16:88615782-88653617 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 821 8 1696 107 6 119 3902 ZC3H18,MVD,IL17C,CYBA,RNF166,SNAI3-AS1,SNAI3
SE_02_104800194 chr16:88616370-88658330 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 194 25 1895 124 6 153 4769 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_001700339 chr16:88616678-88640923 Sample_02_0017 Embryo H9_ESC 339 6 1009 55 4 94 1821 ZC3H18,IL17C,CYBA,SNAI3,MVD,MGC23284
SE_02_002400169 chr16:88618707-88655394 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 169 10 1660 101 5 125 4088 ZC3H18,CYBA,IL17C,MVD,SNAI3,MGC23284,RNF166
SE_02_102900475 chr16:88628518-88659524 Sample_02_1029 Colon HCT116 475 15 1460 103 4 118 4032 ZC3H18,MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_072900397 chr16:88633276-88658476 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 397 7 1198 80 3 87 3464 MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_010600390 chr16:88633662-88657954 Sample_02_0106 Skin NHEK_M 390 4 1158 78 3 83 3396 CYBA,IL17C,MVD,RNF166,SNAI3,MGC23284,CTU2
SE_02_072800589 chr16:88633709-88658403 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 589 6 1175 79 3 87 3463 MVD,IL17C,CYBA,RNF166,CTU2,SNAI3-AS1,SNAI3
SE_02_087300462 chr16:88647570-88655345 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 462 3 378 27 2 27 1322 MVD,CYBA,IL17C,RNF166,SNAI3-AS1,SNAI3
SE_02_125800889 chr16:88648005-88654800 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 889 2 352 26 1 20 1169 MVD,CYBA,IL17C,RNF166,SNAI3-AS1,SNAI3
SE_02_104900962 chr16:88648661-88655937 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 962 1 378 27 2 31 1339 MVD,CYBA,IL17C,RNF166,SNAI3-AS1,SNAI3
SE_02_122401086 chr16:88648665-88653347 Sample_02_1224 Bone marrow normal plasma cell 1086 1 251 14 1 12 958 MVD,CYBA,IL17C,SNAI3-AS1,SNAI3
SE_02_104701419 chr16:88648978-88653502 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1419 1 251 16 1 16 943 MVD,CYBA,IL17C,SNAI3-AS1,SNAI3
SE_02_001500521 chr16:88649116-88659661 Sample_02_0015 Liver HepG2_shNS 521 2 527 40 2 57 1916 CYBA,MVD,RNF166,SNAI3,MGC23284,IL17C,CTU2
SE_02_028600560 chr16:88649245-88654218 Sample_02_0286 Liver HuH7_IL-1alpha_1h 560 1 247 19 1 16 924 CYBA,MVD,SNAI3,MGC23284,IL17C,RNF166
SE_00_002700611 chr16:88649348-88656194 Sample_00_0027 Blood natural-killer-cell 611 1 341 24 2 32 1293 CYBA,MVD,SNAI3,MGC23284,IL17C,RNF166
SE_02_001400335 chr16:88649498-88653198 Sample_02_0014 Liver HepG2_shBRG1 335 1 181 10 1 10 774 CYBA,MVD,IL17C,MGC23284,SNAI3
SE_04_000101022 chr16:88659219-88665457 Sample_04_0001 Blood heat shocked K562 1022 1 252 24 1 10 182 SNAI3-AS1,MVD,IL17C,RNF166,CTU2,SNAI3,CYBA
SE_02_122901218 chr16:88688518-88714858 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1218 13 1343 153 6 85 2451 RNF166,CTU2,IL17C,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_152900386 chr16:88688891-88707885 Sample_02_1529 Peripheral blood neutrophils_0BC75 386 1 884 93 4 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153000595 chr16:88689324-88709554 Sample_02_1530 Peripheral blood neutrophils_0BA0X 595 1 967 99 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_025600309 chr16:88690055-88707332 Sample_02_0256 Peripheral blood MV411 309 1 823 86 2 57 1376 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_087400268 chr16:88691129-88708565 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 268 8 859 91 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_153100554 chr16:88691927-88706840 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 554 1 721 72 1 55 1320 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_025500662 chr16:88696939-88707386 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 662 1 531 57 1 57 1253 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_104900346 chr16:88697048-88704297 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 346 1 394 42 0 38 944 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_104700386 chr16:88697098-88704228 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 386 1 391 42 0 37 941 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_104301904 chr16:88697103-88701038 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1904 1 199 17 0 25 531 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_000800562 chr16:88697301-88708171 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 562 1 558 63 2 54 1204 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_092700477 chr16:88697312-88707000 Sample_02_0927 Peripheral blood neutrophils_US 477 1 489 51 0 52 1133 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_01_008400539 chr16:88697474-88707374 Sample_01_0084 Spleen spleen 539 1 501 55 1 54 1152 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_149201064 chr16:88698360-88707669 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1064 1 472 54 2 52 1058 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_01_005200232 chr16:88698454-88707244 Sample_01_0052 Blood neutrophil 232 1 439 49 0 52 1006 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083300319 chr16:88698651-88707466 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 319 1 445 52 1 41 986 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_002201149 chr16:88698703-88707242 Sample_00_0022 Lung lung_30y 1149 1 424 49 0 41 949 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_00_003900448 chr16:88698897-88707144 Sample_00_0039 Spleen spleen_3y 448 1 409 48 0 39 882 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083500394 chr16:88698901-88707077 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 394 1 405 47 0 39 868 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_034900468 chr16:88698918-88707458 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 468 1 430 51 1 41 919 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_083600541 chr16:88698964-88707270 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 541 1 413 48 0 41 883 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_005500350 chr16:88699194-88707017 Sample_00_0055 Spleen spleen 34y 350 1 389 47 0 34 785 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_107000354 chr16:88699311-88713049 Sample_02_1070 Blood SupT1_WT 354 4 746 94 3 47 1401 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_045500743 chr16:88699339-88707171 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 743 1 387 48 0 34 799 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_119100770 chr16:88699343-88707270 Sample_02_1191 Brain GBM25 770 1 396 48 0 36 816 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_083400627 chr16:88699734-88707366 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 627 1 383 51 1 29 742 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_081600985 chr16:88699761-88707309 Sample_02_0816 Ovary Clear cell ovarian cancer 985 1 378 47 0 29 728 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_083700585 chr16:88699771-88707364 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 585 1 380 50 1 29 732 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_059100150 chr16:88699922-88707277 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 150 1 366 47 0 29 701 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_151800490 chr16:88699948-88704170 Sample_02_1518 Umbilical vein HUVEC_Scr 490 1 232 34 0 12 409 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_059300200 chr16:88700108-88707220 Sample_02_0593 Fetal spleenocytes fetal naive T cells 200 1 349 46 0 29 690 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_058100694 chr16:88700194-88707585 Sample_02_0581 Blood MOLM13_empty_HG 694 1 373 50 2 29 719 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_046100427 chr16:88700278-88707119 Sample_02_0461 Blood MV-4-11-B cells 427 1 340 44 0 27 673 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_034700355 chr16:88700330-88707778 Sample_02_0347 Blood AML11 355 1 380 50 2 29 719 RNF166,CTU2,CYBA,SNAI3,MGC23284,MVD
SE_02_107100229 chr16:88700491-88704184 Sample_02_1071 Blood Jurkat_WT 229 1 214 31 0 12 409 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_02_048400508 chr16:88700677-88713269 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 508 3 687 86 3 40 1368 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059
SE_00_005601030 chr16:88701135-88706913 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1030 1 293 34 0 27 628 RNF166,CTU2,MIR4722,SNAI3,LOC100289580,SNAI3-AS1,MVD,LOC339059
SE_02_109800782 chr16:88701200-88707161 Sample_02_1098 Blood THP1_DMSO_noPMA 782 1 300 37 0 27 645 RNF166,CTU2,MIR4722,SNAI3,LOC100289580,SNAI3-AS1,MVD,LOC339059
SE_02_021600083 chr16:88710603-88767226 Sample_02_0216 Skin NHEK_scramble 83 13 3273 302 11 298 6881 CTU2,FAM38A,RNF166,SNAI3,MGC23284,APRT,CDT1,MVD
SE_02_010600047 chr16:88714423-88779309 Sample_02_0106 Skin NHEK_M 47 15 3596 302 14 309 6087 CTU2,FAM38A,RNF166,SNAI3,APRT,CDT1
SE_02_078000032 chr16:88726044-88784627 Sample_02_0780 Liver SMMC-7721 32 9 3005 269 15 203 3793 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,SNAI3,APRT
SE_02_076400036 chr16:88727272-88785084 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 36 7 2914 264 15 184 3623 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,SNAI3,APRT
SE_01_002200008 chr16:88727446-88773906 Sample_01_0022 Prostate C4-2B 8 8 2421 211 8 142 3475 FAM38A,RNF166,SNAI3,APRT,CDT1,CTU2
SE_02_016200015 chr16:88727536-88774109 Sample_02_0162 Prostate C4-2B_vehicle_24h 15 14 2415 210 9 146 3451 FAM38A,RNF166,SNAI3,APRT,CDT1,CTU2
Genomic distribution of SEs associated with SNAI3
Genome Browser

The strength of the tissue affected by the gene

Expression of SNAI3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)