SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000140675
Gene: SLC5A2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:31483002-31490860 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_089101129 chr16:31422759-31454011 Sample_02_0891 Heart left ventricle_LV1202 1129 13 712 68 0 39 1309 ITGAD,COX6A2,ZNF843,ARMC5,TGFB1I1,SLC5A2
SE_01_009800941 chr16:31422842-31455663 Sample_01_0098 Heart left ventricle_51y 941 13 750 71 0 42 1309 ITGAD,COX6A2,ZNF843,ARMC5,TGFB1I1,SLC5A2
SE_02_089201322 chr16:31423273-31453960 Sample_02_0892 Heart left ventricle_LV1215 1322 15 693 68 0 37 1244 ITGAD,COX6A2,ZNF843,ARMC5,TGFB1I1,SLC5A2
SE_00_004600800 chr16:31423668-31453888 Sample_00_0046 Heart right ventricle_34y 800 10 684 67 0 33 1182 ITGAD,COX6A2,ZNF843,ARMC5,TGFB1I1,SLC5A2
SE_00_003200204 chr16:31427049-31460785 Sample_00_0032 Psoas muscle psoas-muscle_30y 204 6 800 70 0 81 1291 ZNF843,ARMC5,COX6A2,ITGAD,TGFB1I1,SLC5A2,C16ORF58
SE_00_003400504 chr16:31427137-31460792 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 504 7 798 70 0 81 1291 ZNF843,ARMC5,COX6A2,ITGAD,TGFB1I1,SLC5A2,C16ORF58
SE_00_002100636 chr16:31427138-31467764 Sample_00_0021 Lung lung_3y 636 8 1015 84 0 157 2291 ZNF843,ARMC5,COX6A2,ITGAD,TGFB1I1,SLC5A2,C16ORF58
SE_00_002501017 chr16:31427702-31461081 Sample_00_0025 Muscle of leg muscle-of-leg 1017 5 786 70 0 82 1259 ZNF843,ARMC5,COX6A2,ITGAD,TGFB1I1,SLC5A2,C16ORF58
SE_02_003200745 chr16:31441475-31460555 Sample_02_0032 Pancreas pancreatic-islets-M 745 4 483 32 0 58 634 ZNF843,ARMC5,ITGAD,TGFB1I1,SLC5A2,COX6A2,C16ORF58
SE_00_004000698 chr16:31442415-31460657 Sample_00_0040 Spleen spleen_30y 698 4 471 31 0 58 634 ZNF843,ARMC5,ITGAD,TGFB1I1,SLC5A2,COX6A2,C16ORF58
SE_00_001101156 chr16:31442477-31460787 Sample_00_0011 Esophagus esophagus 1156 3 474 30 0 58 625 ZNF843,ARMC5,ITGAD,TGFB1I1,SLC5A2,COX6A2,C16ORF58
SE_02_004600581 chr16:31442508-31460803 Sample_02_0046 Embryo endodermal CyT49_ES_D10 581 3 473 30 0 58 620 ZNF843,ARMC5,ITGAD,TGFB1I1,SLC5A2,COX6A2,C16ORF58
SE_02_004800682 chr16:31442509-31460918 Sample_02_0048 Embryo endodermal CyT49_HE 682 4 474 30 0 58 620 ZNF843,ARMC5,ITGAD,TGFB1I1,SLC5A2,COX6A2,C16ORF58
SE_02_017900384 chr16:31450470-31462833 Sample_02_0179 Urinary bladder T24 384 1 338 20 0 87 666 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_113000706 chr16:31450755-31461498 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 706 4 293 17 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_122900894 chr16:31450822-31481017 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 894 10 800 48 0 210 2506 TGFB1I1,ARMC5,ZNF843,AHSP,C16ORF58,COX6A2,SLC5A2
SE_02_047900849 chr16:31450956-31461491 Sample_02_0479 Head and neck SCC25 849 8 287 17 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_01_009700657 chr16:31450972-31461466 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 657 1 286 17 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_111200800 chr16:31451134-31477631 Sample_02_1112 T lymphocyte THP-6 T-ALL 800 4 704 40 0 210 2386 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_01_007700575 chr16:31451161-31478395 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 575 6 719 41 0 210 2506 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_026400759 chr16:31451235-31475280 Sample_02_0264 Skeletal muscle 7250-empty 759 3 649 39 0 173 1953 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_040700500 chr16:31451311-31461544 Sample_02_0407 Brain BT16 500 2 277 16 0 61 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_040200471 chr16:31451319-31461436 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 471 1 274 16 0 61 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_005500648 chr16:31451406-31475218 Sample_02_0055 Lung IMR-90_Nutlin-3a 648 3 643 38 0 173 1953 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_01_006900787 chr16:31451418-31462530 Sample_01_0069 Adrenal gland adrenal-gland 787 3 307 17 0 80 596 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_059401202 chr16:31451477-31474813 Sample_02_0594 iPSC-derived neural progenitors 1202 4 634 38 0 173 1936 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_01_008300528 chr16:31451480-31478032 Sample_01_0083 Sigmoid colon sigmoid-colon 528 4 706 40 0 210 2481 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_01_007400598 chr16:31451512-31478211 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 598 4 709 40 0 210 2506 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_088601301 chr16:31451518-31461937 Sample_02_0886 Skin foreskin_ p63KLF4 1301 4 282 15 0 61 468 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_144500804 chr16:31451521-31472959 Sample_02_1445 Adipose SW872_TAZ4SA 804 4 588 36 0 146 1582 ARMC5,TGFB1I1,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_153200739 chr16:31451554-31461500 Sample_02_1532 Mammary gland MCF10A 739 2 270 15 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_046600634 chr16:31451610-31477190 Sample_02_0466 Adipose visceral adipocytes 634 9 683 38 0 198 2290 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_137601208 chr16:31451612-31461816 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 1208 4 279 15 0 61 447 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_138300564 chr16:31451639-31466705 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 564 8 448 27 0 117 1287 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_141500676 chr16:31451646-31467304 Sample_02_1415 Brain DIPGIV 676 2 466 27 0 134 1418 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_072700769 chr16:31451669-31474996 Sample_02_0727 Fetal lung IMR90_Etoposide 769 3 635 38 0 173 1953 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_102900977 chr16:31451705-31462619 Sample_02_1029 Colon HCT116 977 6 305 17 0 80 614 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_045201111 chr16:31451714-31461515 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 1111 5 267 15 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_01_007800593 chr16:31451727-31477866 Sample_01_0078 Heart left ventricle heart-left-ventricle 593 4 697 40 0 210 2451 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_141600507 chr16:31451765-31475295 Sample_02_1416 Brain SF9402 507 3 637 38 0 173 1953 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_078000701 chr16:31451963-31460779 Sample_02_0780 Liver SMMC-7721 701 1 251 12 0 58 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_071900622 chr16:31452060-31461407 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 622 6 254 13 0 60 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_137400733 chr16:31452089-31461827 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 733 6 267 13 0 61 449 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_072000460 chr16:31452139-31461601 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 460 3 259 13 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_01_007300794 chr16:31452139-31477707 Sample_01_0073 Coronary artery coronary-artery 794 4 681 37 0 210 2409 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_009300508 chr16:31452192-31461042 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 508 2 248 12 0 59 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_137501033 chr16:31452406-31461620 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 1033 4 253 13 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_01_003900677 chr16:31452418-31461012 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 677 3 240 12 0 59 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_064600581 chr16:31452439-31461316 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 581 3 244 13 0 59 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_109500780 chr16:31452471-31461427 Sample_02_1095 Blood CD34 Erythroid cells_Don002 780 3 247 13 0 61 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_138100401 chr16:31452475-31477402 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 401 7 667 36 0 200 2332 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_130900741 chr16:31452480-31461166 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 741 2 242 12 0 59 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_143201160 chr16:31452520-31466841 Sample_02_1432 Bone A673 STAG2 WT 1160 3 428 25 0 126 1327 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_01_008900473 chr16:31452970-31478952 Sample_01_0089 Transverse colon transverse-colon 473 4 694 40 0 210 2506 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_114500863 chr16:31453299-31477496 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 863 7 648 35 0 208 2352 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_034700448 chr16:31453306-31477622 Sample_02_0347 Blood AML11 448 4 652 36 0 210 2382 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_109400167 chr16:31454169-31477929 Sample_02_1094 Embryo H9_0Dox 167 4 640 36 0 207 2464 TGFB1I1,ARMC5,ZNF843,AHSP,C16ORF58,COX6A2,SLC5A2
SE_02_039601215 chr16:31454882-31460904 Sample_02_0396 Skin NHEK-D 1215 1 181 8 0 55 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_083300918 chr16:31456486-31468378 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 918 2 370 22 0 128 1431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_034200674 chr16:31456505-31477891 Sample_02_0342 Liver HSPCs_F0 674 4 577 32 0 204 2457 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_083500777 chr16:31456640-31468816 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 777 3 377 22 0 128 1431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_036200470 chr16:31457493-31478398 Sample_02_0362 Haematopoietic and lymphoid tissue REH 470 3 563 32 0 204 2506 ARMC5,TGFB1I1,AHSP,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_143000187 chr16:31457599-31468571 Sample_02_1430 Blood Kasumi-3_mock-infected 187 2 349 22 0 128 1431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_143100788 chr16:31457612-31461405 Sample_02_1431 Blood T cell 788 1 120 7 0 54 431 ARMC5,ZNF843,TGFB1I1,C16ORF58,COX6A2,SLC5A2
SE_02_004500920 chr16:31457701-31460849 Sample_02_0045 Embryo endodermal CyT49_ES_D7 920 1 109 6 0 52 431 ARMC5,TGFB1I1,SLC5A2,COX6A2,C16ORF58,ZNF843
SE_02_057601245 chr16:31460957-31480924 Sample_02_0576 Blood HEL_sgLKB1e2 1245 5 511 32 0 152 2075 TGFB1I1,ARMC5,ZNF843,AHSP,C16ORF58,COX6A2,SLC5A2
SE_02_104800997 chr16:31465865-31495646 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 997 11 756 34 1 213 3235 TGFB1I1,ARMC5,C16ORF58,SLC5A2,ZNF843,AHSP,COX6A2
SE_02_048400608 chr16:31466078-31477577 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 608 2 264 11 0 98 1248 TGFB1I1,ARMC5,ZNF843,C16ORF58,COX6A2,SLC5A2
SE_02_048900266 chr16:31466081-31487801 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 266 3 533 30 1 142 2012 TGFB1I1,ARMC5,SLC5A2,ZNF843,AHSP,C16ORF58,COX6A2
SE_02_081900484 chr16:31466992-31488563 Sample_02_0819 Ovary Mucinous ovarian cancer 484 3 526 30 1 131 1952 TGFB1I1,ARMC5,SLC5A2,ZNF843,AHSP,C16ORF58,COX6A2
SE_02_122901048 chr16:31496375-31537074 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1048 11 1049 134 4 37 709 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2,C16orf58
SE_02_146800794 chr16:31502969-31531155 Sample_02_1468 Blood HUDEP-2_WT 794 8 725 108 3 21 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2
SE_02_103601816 chr16:31503769-31513814 Sample_02_1036 Mammary gland HCC70_XY018 1816 2 272 26 1 20 229 C16ORF58,ARMC5,TGFB1I1,AHSP,SLC5A2
SE_01_004400749 chr16:31503946-31538463 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 749 5 882 136 3 20 448 AHSP,C16ORF58,TGFB1I1,SLC5A2,ARMC5,CSDAP1
SE_02_043100451 chr16:31504669-31538031 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 451 8 851 133 3 20 448 AHSP,C16ORF58,TGFB1I1,SLC5A2,ARMC5,CSDAP1
SE_02_146700211 chr16:31505718-31531206 Sample_02_1467 Blood HUDEP-2_LRFKO 211 5 648 104 3 20 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2
SE_02_109600182 chr16:31506754-31538145 Sample_02_1096 Blood CD34 Erythroid cells_Don003 182 9 796 129 3 20 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2
SE_02_001600131 chr16:31506911-31539776 Sample_02_0016 Blood erythroblasts 131 3 840 132 3 20 448 AHSP,C16ORF58,TGFB1I1,SLC5A2,ARMC5,CSDAP1
SE_04_000100854 chr16:31506975-31537913 Sample_04_0001 Blood heat shocked K562 854 5 788 127 3 19 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2,C16orf58
SE_02_109500196 chr16:31507111-31537775 Sample_02_1095 Blood CD34 Erythroid cells_Don002 196 6 780 125 3 19 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2
SE_02_111600743 chr16:31507163-31536508 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 743 7 746 117 3 19 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2,C16orf58
SE_02_146600495 chr16:31507212-31536047 Sample_02_1466 Blood HUDEP-2_BCL11AKO 495 4 737 115 3 19 448 AHSP,C16ORF58,ARMC5,TGFB1I1,YBX3P1,SLC5A2
SE_02_101800323 chr16:31519873-31537980 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 323 4 462 83 1 0 214 AHSP,C16ORF58,TGFB1I1,YBX3P1,SLC5A2
Genomic distribution of SEs associated with SLC5A2
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC5A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)