SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000080189
Gene: SLC35C2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:46345980-46364458 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_004700050 chr20:46174809-46318323 Sample_02_0047 Pancreatic endoderm IIDP/donor790 50 26 3929 182 16 891 1937 CDH22,SLC35C2
SE_02_003300270 chr20:46174866-46318028 Sample_02_0033 Pancreas pancreatic-islets-F 270 24 3921 182 16 887 1920 CDH22,SLC35C2
SE_02_104600183 chr20:46186538-46374877 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 183 63 5211 245 30 1172 3762 SLC35C2,ELMO2,CDH22
SE_02_077500210 chr20:46254201-46350385 Sample_02_0775 Pancreas EndoC-BH1_SE 210 23 2770 150 21 621 369 SLC35C2,CDH22
SE_02_123700442 chr20:46313497-46335726 Sample_02_1237 Skin MKL2_virus_positive 442 8 634 24 9 170 0 CDH22,SLC35C2
SE_02_078100499 chr20:46326873-46404667 Sample_02_0781 Lymphoma Pfeiffer_DMSO 499 28 2040 79 11 429 3088 SLC35C2,ELMO2,CDH22
SE_02_030400488 chr20:46327861-46368653 Sample_02_0304 Neuroblastoma N206 488 7 1187 51 10 276 1510 SLC35C2,ELMO2
SE_01_004000116 chr20:46328572-46411142 Sample_01_0040 Haematopoietic and lymphoid tissue Karpas-422 116 10 2163 90 10 453 3220 SLC35C2,ELMO2
SE_02_104700554 chr20:46329666-46379460 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 554 16 1386 62 10 305 2293 SLC35C2,ELMO2,CDH22
SE_02_138400688 chr20:46330081-46357544 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 688 6 835 37 9 186 753 SLC35C2,ELMO2,CDH22
SE_02_104900234 chr20:46332324-46411591 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 234 42 2067 84 8 428 3220 SLC35C2,ELMO2,CDH22,ZNF663P
SE_02_118100770 chr20:46341152-46376553 Sample_02_1181 Brain GBM10 770 8 1004 39 4 248 2237 SLC35C2,ELMO2,CDH22
SE_02_096700348 chr20:46341207-46383104 Sample_02_0967 Brain H3.3K27M_JN57 348 9 1138 43 4 258 2570 SLC35C2,ELMO2,CDH22
SE_02_120000640 chr20:46341256-46376830 Sample_02_1200 Brain GBM36 640 7 1005 40 4 248 2276 SLC35C2,ELMO2,CDH22
SE_02_120300554 chr20:46341285-46411615 Sample_02_1203 Brain NB1 554 16 1811 69 4 379 3220 SLC35C2,ELMO2,CDH22,ZNF663P
SE_02_097100772 chr20:46341341-46376797 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 772 8 1002 40 4 247 2271 SLC35C2,ELMO2,CDH22
SE_02_141001667 chr20:46341493-46376832 Sample_02_1410 Brain GSC6 1667 5 997 40 4 246 2276 SLC35C2,ELMO2,CDH22
SE_02_104800590 chr20:46343388-46390059 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 590 18 1232 44 4 274 2816 SLC35C2,ELMO2,CDH22
SE_02_104301366 chr20:46344101-46377927 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1366 19 930 35 4 197 2293 SLC35C2,ELMO2,CDH22
SE_02_120500641 chr20:46347204-46410966 Sample_02_1205 Brain NB3 641 15 1613 60 3 315 3220 SLC35C2,ELMO2,CDH22,ZNF663P
SE_02_110700320 chr20:46347928-46373715 Sample_02_1107 Brain SK-N-AS 320 14 720 28 3 174 1977 SLC35C2,ELMO2,CDH22
SE_00_005100810 chr20:46349742-46368310 Sample_00_0051 Adrenal gland adrenal gland 30y 810 14 519 19 3 108 1472 SLC35C2,ELMO2,CDH22
SE_02_096500571 chr20:46349754-46376775 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 571 5 726 28 3 163 2228 SLC35C2,ELMO2,CDH22
SE_02_103400753 chr20:46350146-46369762 Sample_02_1034 Blood AML cell 753 3 546 21 3 110 1455 SLC35C2,ELMO2,CDH22
SE_00_000900882 chr20:46357076-46367041 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 882 2 270 9 1 52 660 SLC35C2,ELMO2
SE_02_104400417 chr20:46358986-46378713 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 417 5 465 22 1 106 1298 SLC35C2,ELMO2
SE_02_092901172 chr20:46359013-46368437 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1172 2 224 12 1 51 512 SLC35C2,ELMO2
SE_02_123900167 chr20:46364536-46399450 Sample_02_1239 Skin Waga_virus_positive 167 6 796 30 1 177 1871 ELMO2,SLC35C2
SE_02_123700896 chr20:46366456-46396385 Sample_02_1237 Skin MKL2_virus_positive 896 9 702 26 1 152 1731 ELMO2,SLC35C2
SE_02_108300818 chr20:46371239-46411091 Sample_02_1083 Macula macula 818 12 940 35 0 177 1519 ELMO2,SLC35C2,ZNF663P
SE_02_108200828 chr20:46381429-46411134 Sample_02_1082 Retina retina 828 11 698 27 0 125 804 ELMO2,SLC35C2,ZNF663P
SE_02_149201437 chr20:46392663-46411104 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1437 4 425 22 0 77 404 ELMO2,SLC35C2,ZNF663P
SE_02_118100830 chr20:46393252-46411045 Sample_02_1181 Brain GBM10 830 6 413 22 0 74 373 ELMO2,SLC35C2,ZNF663P
SE_01_008401270 chr20:46394123-46411323 Sample_01_0084 Spleen spleen 1270 3 393 22 0 72 262 ELMO2,SLC35C2
SE_02_122400868 chr20:46394916-46409998 Sample_02_1224 Bone marrow normal plasma cell 868 6 343 17 0 60 183 ELMO2,SLC35C2,ZNF663P
SE_02_077501229 chr20:46397304-46411647 Sample_02_0775 Pancreas EndoC-BH1_SE 1229 5 347 16 0 48 183 ELMO2,SLC35C2,ZNF663P
SE_00_000800741 chr20:46398317-46408689 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 741 1 242 13 0 40 183 ELMO2,SLC35C2
SE_01_006800160 chr20:46398577-46406627 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 160 4 183 7 0 17 115 ELMO2,SLC35C2
SE_00_005501018 chr20:46398698-46411041 Sample_00_0055 Spleen spleen 34y 1018 4 304 16 0 45 157 ELMO2,SLC35C2,ZNF663P
SE_01_010101356 chr20:46398772-46411066 Sample_01_0101 Pancreas pancreas_54y 1356 4 302 15 0 47 148 ELMO2,SLC35C2,ZNF663P
SE_02_081601811 chr20:46398831-46411043 Sample_02_0816 Ovary Clear cell ovarian cancer 1811 3 297 15 0 45 142 ELMO2,SLC35C2,ZNF663P
SE_02_096700989 chr20:46399177-46411087 Sample_02_0967 Brain H3.3K27M_JN57 989 4 291 15 0 46 132 ELMO2,SLC35C2,ZNF663P
Genomic distribution of SEs associated with SLC35C2
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC35C2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)