SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000155850
Gene: SLC26A2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:149960758-149993455 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_115800078 chr5:149856930-149923590 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 78 14 1909 108 4 98 1336 PDE6A,SLC26A2,LOC644762
SE_02_040100313 chr5:149877678-149941905 Sample_02_0401 Mammary gland SUM159PT-T47D 313 10 1828 112 4 96 826 PDE6A,SLC26A2
SE_02_116600119 chr5:149878086-149942635 Sample_02_1166 Biliary H69_TGF beta_16h_1 119 19 1833 113 4 96 826 PDE6A,LOC644762,SLC26A2
SE_02_116800154 chr5:149878088-149942648 Sample_02_1168 Biliary H69_TGF Vehicle_2 154 21 1833 113 4 96 826 PDE6A,LOC644762,SLC26A2
SE_02_116900130 chr5:149878468-149942860 Sample_02_1169 Biliary H69_TGF beta_16h_2 130 22 1836 115 4 96 826 PDE6A,LOC644762,SLC26A2
SE_02_116700151 chr5:149878521-149942696 Sample_02_1167 Biliary H69_TGF Vehicle_1 151 13 1829 114 4 96 826 PDE6A,LOC644762,SLC26A2
SE_02_136100151 chr5:149880711-149943905 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 151 12 1814 109 4 96 826 PDE6A,LOC644762,SLC26A2
SE_02_105700478 chr5:149885991-149917291 Sample_02_1057 Esophagus GihTRT 478 5 940 58 2 51 488 PDE6A,SLC26A2,LOC644762
SE_02_093000869 chr5:149904079-149949542 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 869 23 1342 83 3 73 436 PDE6A,LOC644762,SLC26A2
SE_02_058900192 chr5:149904559-149958049 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 192 15 1531 97 4 80 436 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_124200191 chr5:149905109-149960575 Sample_02_1242 Skin UISO_virus_negative 191 13 1565 102 4 81 440 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_113200465 chr5:149910931-149942725 Sample_02_1132 Pancreas KLM1 wt 465 5 906 48 3 41 241 PDE6A,LOC644762,SLC26A2
SE_02_017700578 chr5:149911897-149941819 Sample_02_0177 Urinary bladder J82 578 4 858 41 2 41 241 PDE6A,SLC26A2
SE_02_077100323 chr5:149912049-149942285 Sample_02_0771 Ovary OVCA429_shGRHL2 323 17 864 42 2 41 241 PDE6A,LOC644762,SLC26A2
SE_02_136000525 chr5:149912158-149922287 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 525 1 321 18 0 7 70 PDE6A,SLC26A2,LOC644762
SE_02_136200806 chr5:149912966-149922237 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 806 1 298 16 0 7 70 PDE6A,SLC26A2,LOC644762
SE_02_105900833 chr5:149913380-149926248 Sample_02_1059 Bone A673_WT 833 1 388 15 0 10 70 PDE6A,SLC26A2,LOC644762
SE_02_147300841 chr5:149913380-149926248 Sample_02_1473 Bone A-673 841 1 388 15 0 10 70 PDE6A,SLC26A2,LOC644762
SE_02_126500583 chr5:149913787-149941946 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 583 3 801 34 2 40 241 PDE6A,LOC644762,SLC26A2
SE_02_143300746 chr5:149913929-149954292 Sample_02_1433 Bone A673 STAG2 null 746 15 1154 63 2 73 380 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_148000371 chr5:149913962-149943624 Sample_02_1480 Bone MHH-ES-1 371 12 847 40 2 39 241 PDE6A,LOC644762,SLC26A2
SE_02_126600504 chr5:149914075-149941725 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 504 4 782 34 2 39 241 PDE6A,LOC644762,SLC26A2
SE_02_148100237 chr5:149914129-149943417 Sample_02_1481 Bone MIC 237 12 837 40 2 39 241 PDE6A,LOC644762,SLC26A2
SE_02_148300238 chr5:149914152-149942759 Sample_02_1483 Bone RD-ES 238 10 810 37 2 39 241 PDE6A,LOC644762,SLC26A2
SE_02_066100237 chr5:149915151-149952187 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 237 10 1072 60 2 63 352 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_059000293 chr5:149915450-149941539 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 293 8 731 32 2 34 207 PDE6A,LOC644762,SLC26A2
SE_01_001700073 chr5:149920130-149941548 Sample_01_0017 Muscle A673 73 3 583 26 2 34 207 PDE6A,SLC26A2
SE_02_148400118 chr5:149920652-149940177 Sample_02_1484 Bone Rh1 118 6 521 23 2 34 207 PDE6A,LOC644762,SLC26A2
SE_02_122901304 chr5:149921933-149958433 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1304 15 988 62 3 69 310 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_105900317 chr5:149928439-149944047 Sample_02_1059 Bone A673_WT 317 1 432 21 2 31 171 PDE6A,LOC644762,SLC26A2
SE_02_147300318 chr5:149928439-149944047 Sample_02_1473 Bone A-673 318 1 432 21 2 31 171 PDE6A,LOC644762,SLC26A2
SE_02_105800713 chr5:149929671-149941903 Sample_02_1058 Bone A673_SA2 Rescue 713 1 331 13 2 31 171 PDE6A,LOC644762,SLC26A2
SE_02_109500774 chr5:149929741-149953214 Sample_02_1095 Blood CD34 Erythroid cells_Don002 774 3 675 41 2 59 310 PDE6A,LOC644762,SLC26A2,TIGD6,HMGXB3
SE_02_058800595 chr5:149930177-149941546 Sample_02_0588 Cervix HeLa Kyoto_untreated 595 7 308 9 2 29 171 PDE6A,LOC644762,SLC26A2
SE_02_094100699 chr5:149930455-149940668 Sample_02_0941 Brain T98G 699 5 268 7 2 29 171 PDE6A,LOC644762,SLC26A2
SE_02_108300719 chr5:149930543-149947963 Sample_02_1083 Macula macula 719 3 507 32 2 58 310 PDE6A,LOC644762,SLC26A2
SE_02_018500274 chr5:149932041-149955848 Sample_02_0185 Skin UACC257 274 7 655 42 3 61 264 PDE6A,HMGXB3,TIGD6,SLC26A2
SE_02_129700593 chr5:149934132-149958106 Sample_02_1297 Lung lung 593 10 656 45 2 60 215 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_018400482 chr5:149934250-149955058 Sample_02_0184 Skin SKMEL30 482 5 588 39 1 60 211 PDE6A,HMGXB3,TIGD6,SLC26A2
SE_02_085600251 chr5:149934600-149955688 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 251 2 591 39 1 56 179 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_136000668 chr5:149934638-149941772 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 668 1 198 7 1 19 30 PDE6A,SLC26A2,LOC644762
SE_02_057100354 chr5:149934745-149958992 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 354 8 659 46 2 51 159 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_136201087 chr5:149934813-149941747 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1087 1 189 7 1 16 9 PDE6A,SLC26A2,LOC644762
SE_02_057000144 chr5:149934846-149959077 Sample_02_0570 Brain LN229_10_mM_glucose 144 10 656 46 2 51 141 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_01_004500645 chr5:149934859-149941767 Sample_01_0045 Mammary gland mammary-epithelial-cell 645 1 188 7 1 16 2 PDE6A,SLC26A2
SE_02_066000415 chr5:149934924-149943329 Sample_02_0660 Mammary gland MCF10DCIS 415 1 238 11 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_059600413 chr5:149935034-149941567 Sample_02_0596 Mammary gland MCF10A_ DMSO 413 1 182 5 1 14 0 PDE6A,SLC26A2,LOC644762
SE_02_116200659 chr5:149935092-149942318 Sample_02_1162 Stomach YCC11 659 1 204 8 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_059700319 chr5:149935151-149952355 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 319 4 502 32 1 44 139 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_064701417 chr5:149935165-149943279 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1417 7 233 10 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_060300419 chr5:149935183-149952434 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 419 2 505 32 1 44 139 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_065201106 chr5:149935190-149943237 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1106 6 227 10 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_094200145 chr5:149935227-149953926 Sample_02_0942 Brain LN229 145 8 544 35 1 48 139 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_060200378 chr5:149935237-149941466 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 378 1 173 3 1 14 0 PDE6A,SLC26A2,LOC644762
SE_02_057200754 chr5:149935313-149955470 Sample_02_0572 Brain LN229_1_mM_glucose 754 9 570 38 1 50 139 PDE6A,SLC26A2,TIGD6,LOC644762,HMGXB3
SE_02_049101053 chr5:149935375-149943193 Sample_02_0491 Pharyng Detroit 562-Control 1053 1 219 10 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_049201173 chr5:149935385-149943193 Sample_02_0492 Pharyng Detroit 562_LPS 1173 2 219 10 1 16 0 PDE6A,SLC26A2,LOC644762
SE_02_068200123 chr5:149935409-149945324 Sample_02_0682 Blood Kasumi-1 123 2 292 15 1 39 139 PDE6A,SLC26A2,LOC644762
SE_01_005800645 chr5:149936204-149942391 Sample_01_0058 Prostate PC-3 645 1 171 5 0 16 0 PDE6A,SLC26A2
SE_02_040600062 chr5:149936274-149960662 Sample_02_0406 Mammary gland ZR-75-30_parental 62 7 651 47 1 52 156 PDE6A,HMGXB3,TIGD6,SLC26A2
SE_02_102800170 chr5:149937291-149943390 Sample_02_1028 Blood HL-60_WT 170 1 173 8 0 11 0 PDE6A,SLC26A2,LOC644762
SE_02_019700075 chr5:149938699-149948885 Sample_02_0197 Stomach SNU1750 75 5 318 28 0 34 139 PDE6A,SLC26A2
SE_02_016900190 chr5:149992415-150003120 Sample_02_0169 Prostate LNCaP_R1881 190 1 301 32 0 41 672 HMGXB3,TIGD6,PDE6A,SLC26A2
SE_02_141000563 chr5:149992624-150059420 Sample_02_1410 Brain GSC6 563 13 1832 215 4 261 3050 TIGD6,HMGXB3,CSF1R,SLC26A2,PDE6A
SE_02_026100853 chr5:149992765-150045265 Sample_02_0261 Osteoblastic hFOB_differentiated 853 7 1357 157 3 163 1699 HMGXB3,TIGD6,PDE6A,SLC26A2
SE_02_017000222 chr5:149992800-150003016 Sample_02_0170 Prostate LNCaP_R1881_DOX 222 1 287 30 0 41 672 HMGXB3,TIGD6,PDE6A,SLC26A2
SE_02_117400100 chr5:149993340-150067106 Sample_02_1174 Brain GBM02 100 33 2053 261 8 291 3391 TIGD6,HMGXB3,CSF1R,SLC26A2,PDE6A
SE_02_140700160 chr5:149993447-150002451 Sample_02_1407 Prostate LNCaP_R1881 4h 160 2 264 28 0 38 641 TIGD6,HMGXB3,SLC26A2,PDE6A
SE_02_016800357 chr5:149993625-150002803 Sample_02_0168 Prostate LNCaP 357 1 265 26 0 38 615 HMGXB3,TIGD6,PDE6A,SLC26A2
SE_02_076400301 chr5:149993655-150003096 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 301 1 272 28 0 38 610 TIGD6,HMGXB3,SLC26A2,PDE6A
SE_02_066400398 chr5:149993837-150002039 Sample_02_0664 Prostate LNCaP_DMSO 398 1 248 24 0 38 586 TIGD6,HMGXB3,SLC26A2,PDE6A
SE_02_140900158 chr5:149994011-150002182 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 158 1 243 23 0 38 576 TIGD6,HMGXB3,SLC26A2,PDE6A
SE_02_117700436 chr5:149994073-150066796 Sample_02_1177 Brain GBM05 436 16 2023 254 7 291 3317 TIGD6,HMGXB3,CSF1R,SLC26A2,PDE6A
SE_01_006800348 chr5:149994114-149997935 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 348 1 119 8 0 4 269 TIGD6,HMGXB3,PDE6A,SLC26A2
SE_02_051000200 chr5:149994761-149998284 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 200 1 120 9 0 4 201 TIGD6,SLC26A2,HMGXB3,PDE6A
SE_02_051100618 chr5:149994765-149997725 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 618 1 87 5 0 4 201 TIGD6,SLC26A2,HMGXB3,PDE6A
SE_02_152201185 chr5:149994954-150023832 Sample_02_1522 Skin A375 RTKi 1185 8 778 94 0 80 867 TIGD6,HMGXB3,SLC26A2
SE_02_120000327 chr5:149995355-150068393 Sample_02_1200 Brain GBM36 327 23 2053 260 9 293 3247 TIGD6,HMGXB3,CSF1R,SLC26A2
SE_02_143700548 chr5:149997785-150067924 Sample_02_1437 Liver LSEC-TNF 548 25 1957 254 8 287 3046 TIGD6,HMGXB3,CSF1R,SLC26A2
SE_02_042200079 chr5:149998016-150044825 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 79 6 1191 142 3 156 1326 HMGXB3,TIGD6,SLC26A2
SE_02_122900635 chr5:149998404-150055585 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 635 29 1533 187 4 233 2371 TIGD6,HMGXB3,CSF1R,SLC26A2,CSNK1A1,ARHGEF37
SE_02_011001022 chr5:149998596-150068609 Sample_02_0110 Ovaries IOE11 1022 10 1942 253 9 289 3131 HMGXB3,TIGD6,CSF1R,SLC26A2
SE_02_030100197 chr5:149998629-150069835 Sample_02_0301 Neuroblastoma GIMEN 197 8 1990 254 9 289 3180 HMGXB3,TIGD6,CSF1R,SLC26A2
SE_02_043300156 chr5:149998905-150044793 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 156 6 1161 138 3 156 1326 HMGXB3,TIGD6,SLC26A2
SE_02_048100324 chr5:149998929-150067198 Sample_02_0481 Mammary gland MDA-MB231 324 23 1887 243 8 287 3046 TIGD6,HMGXB3,CSF1R,SLC26A2
SE_02_025900220 chr5:149999057-150025441 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 220 3 688 84 0 90 777 HMGXB3,TIGD6,SLC26A2
SE_02_026000176 chr5:149999180-150027329 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 176 6 738 88 1 105 894 HMGXB3,TIGD6,SLC26A2
SE_02_051700519 chr5:149999243-150032284 Sample_02_0517 Esophagus TE5 519 14 850 96 1 116 968 TIGD6,HMGXB3,SLC26A2
SE_02_050600524 chr5:149999243-150032285 Sample_02_0506 Esophagus TE5_1 524 15 850 96 1 116 968 TIGD6,HMGXB3,SLC26A2
SE_02_026200906 chr5:149999327-150045374 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 906 6 1173 139 3 156 1338 HMGXB3,TIGD6,SLC26A2
SE_02_059400293 chr5:149999396-150082370 Sample_02_0594 iPSC-derived neural progenitors 293 18 2350 277 12 340 3997 TIGD6,HMGXB3,CSF1R,SLC26A2
SE_02_017300546 chr5:149999521-150068037 Sample_02_0173 Lung IMR-90_senescent 546 12 1898 247 8 287 3046 HMGXB3,TIGD6,CSF1R,SLC26A2
SE_02_005700638 chr5:149999719-150025505 Sample_02_0057 Mammary gland vHMEC 638 6 671 85 0 90 777 HMGXB3,TIGD6,SLC26A2
SE_02_144500433 chr5:149999790-150069500 Sample_02_1445 Adipose SW872_TAZ4SA 433 19 1952 253 9 289 3126 TIGD6,HMGXB3,CSF1R,SLC26A2
SE_02_141600240 chr5:150003395-150068645 Sample_02_1416 Brain SF9402 240 17 1820 240 9 255 2832 CSF1R,HMGXB3,SLC26A2,TIGD6
SE_02_066101065 chr5:150004540-150024731 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 1065 6 522 61 0 54 459 HMGXB3,SLC26A2,TIGD6
SE_02_132100560 chr5:150007557-150067833 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 560 15 1685 212 8 242 2612 CSF1R,HMGXB3,SLC26A2,TIGD6
SE_02_053000832 chr5:150007566-150053611 Sample_02_0530 Mammary gland MCF10A 832 9 1224 142 4 174 1649 CSF1R,HMGXB3,SLC26A2,TIGD6
SE_02_143600571 chr5:150008309-150068358 Sample_02_1436 Liver LSEC-Ctrl 571 20 1691 214 9 244 2665 CSF1R,HMGXB3,SLC26A2,TIGD6
SE_02_143800620 chr5:150008535-150068273 Sample_02_1438 Liver LSEC 620 18 1681 214 9 243 2649 CSF1R,HMGXB3,SLC26A2,TIGD6
SE_02_093600303 chr5:150009824-150068570 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 303 14 1669 212 9 243 2697 CSF1R,HMGXB3,SLC26A2,TIGD6
Genomic distribution of SEs associated with SLC26A2
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC26A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)