SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000112337
Gene: SLC17A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:25912754-25930726 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152300295 chr6:25863018-25912073 Sample_02_1523 Lung A549 DMSO 295 16 1197 203 56 17 95 SLC17A3,SLC17A1,SLC17A2
SE_00_002300583 chr6:25873604-25900608 Sample_00_0023 Embryo mesenchymal-stem-cell 583 4 645 112 28 14 46 SLC17A3,SLC17A2,SLC17A1
SE_02_138900428 chr6:25907426-25935326 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 428 5 734 105 25 108 656 SLC17A2,TRIM38,SLC17A3
SE_02_138800788 chr6:25908377-25929382 Sample_02_1388 Peripheral blood JB6_ALK+ 788 4 553 83 22 84 566 SLC17A2,TRIM38,SLC17A3
SE_02_139000640 chr6:25909709-25929316 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 640 3 515 77 21 84 566 SLC17A2,TRIM38,SLC17A3
SE_00_003600873 chr6:25951718-25993554 Sample_00_0036 Small intestine small-intestine_108days 873 6 980 106 19 18 975 TRIM38,HIST1H3B,HIST1H1A,SLC17A2,HIST1H2AB,HIST1H4B,HIST1H4A,HIST1H3A
SE_00_002000610 chr6:25951811-25993651 Sample_00_0020 Large intestine large-intestine_108d 610 7 982 106 19 18 975 TRIM38,HIST1H3B,HIST1H1A,SLC17A2,HIST1H2AB,HIST1H4B,HIST1H4A,HIST1H3A
SE_02_098900679 chr6:25955456-25994224 Sample_02_0989 Kidney kidney cortex_WT 679 14 907 94 18 18 975 TRIM38,HIST1H2AB,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4B,HIST1H2BB,HIST1H3B,HIST1H4A,HIST1H2AC,HIST1H3C,HIST1H4C,HIST1H1C,HIST1H1E
SE_02_104902125 chr6:25957755-25993635 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2125 19 838 78 13 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A
SE_02_075800611 chr6:25958042-25964750 Sample_02_0758 Peripheral blood REH 611 2 156 17 6 2 152 TRIM38,SLC17A2
SE_02_064502067 chr6:25958316-25972118 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2067 3 317 28 8 14 350 TRIM38,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4A
SE_01_008401454 chr6:25958450-25993981 Sample_01_0084 Spleen spleen 1454 5 823 76 13 18 975 TRIM38,HIST1H3B,HIST1H1A,SLC17A2,HIST1H2AB,HIST1H4B,HIST1H4A,HIST1H3A,HIST1H2BB
SE_02_154900689 chr6:25958481-25993586 Sample_02_1549 Gastrointestinal Stromal GIST-430B 689 11 815 74 12 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A
SE_02_143600963 chr6:25958483-25993688 Sample_02_1436 Liver LSEC-Ctrl 963 11 818 74 12 18 975 TRIM38,HIST1H2AB,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4B,HIST1H2BB,HIST1H3B,HIST1H4A
SE_02_064401094 chr6:25958609-25971114 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 1094 3 292 27 7 11 307 TRIM38,HIST1H1A,HIST1H3A,SLC17A2
SE_02_122400894 chr6:25958704-25993655 Sample_02_1224 Bone marrow normal plasma cell 894 16 813 74 12 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A
SE_02_143801097 chr6:25958779-25993556 Sample_02_1438 Liver LSEC 1097 10 806 74 12 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A
SE_02_046601159 chr6:25959015-25993617 Sample_02_0466 Adipose visceral adipocytes 1159 17 797 73 11 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A,HIST1H3C,HIST1H1C,HIST1H2BB
SE_01_011501070 chr6:25959286-25972451 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1070 2 290 25 6 14 368 TRIM38,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4A
SE_02_048101881 chr6:25960737-25974447 Sample_02_0481 Mammary gland MDA-MB231 1881 5 306 25 6 14 426 TRIM38,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4A
SE_02_149201349 chr6:25961453-25994563 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1349 8 761 68 10 18 975 TRIM38,HIST1H2AB,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4B,HIST1H2BB,HIST1H3B,HIST1H4A
SE_02_081800721 chr6:25961580-25975577 Sample_02_0818 Ovary High-grade serous ovarian cancer 721 3 307 23 5 13 476 TRIM38,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4A
Genomic distribution of SEs associated with SLC17A2
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC17A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)