SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000177045
Gene: SIX5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:45764785-45769252 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138100162 chr19:45676915-45729091 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 162 27 1409 106 7 203 3225 QPCTL,FBXO46,SNRPD2,GIPR,MIR642B,BHMG1,MIR642A,EML2-AS1,EML2,SIX5,MIR330
SE_02_082600291 chr19:45680598-45728408 Sample_02_0826 Stomach gastric tumor 291 23 1280 99 4 163 2866 QPCTL,FBXO46,SNRPD2,GIPR,MIR642B,BHMG1,MIR642A,EML2-AS1,EML2,SIX5,MIR330
SE_02_138300141 chr19:45681172-45728950 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 141 35 1281 96 4 162 2866 QPCTL,FBXO46,SNRPD2,GIPR,MIR642B,BHMG1,MIR642A,EML2-AS1,EML2,SIX5,MIR330
SE_02_122400873 chr19:45694980-45728516 Sample_02_1224 Bone marrow normal plasma cell 873 35 866 65 2 130 1925 QPCTL,FBXO46,MIR642B,GIPR,SIX5,SNRPD2,BHMG1,EML2,MIR642A
SE_02_146700701 chr19:45697682-45723197 Sample_02_1467 Blood HUDEP-2_LRFKO 701 5 675 51 2 105 1735 QPCTL,FBXO46,MIR642B,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_021600912 chr19:45697962-45726541 Sample_02_0216 Skin NHEK_scramble 912 5 743 52 2 106 1783 QPCTL,FBXO46,SIX5,SNRPD2,MIR642A,MIR642B,GIPR
SE_02_055300214 chr19:45698506-45729054 Sample_02_0553 Other HSSY2 shCt 214 12 782 54 2 106 1764 QPCTL,FBXO46,MIR642B,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_082700203 chr19:45702818-45728401 Sample_02_0827 Stomach normal gastric 203 9 638 40 0 95 1517 QPCTL,FBXO46,MIR642B,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_074600528 chr19:45706945-45724398 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 528 13 419 27 0 92 1308 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_157301296 chr19:45707121-45724631 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1296 7 423 27 0 92 1308 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_074500597 chr19:45707221-45719272 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 597 7 311 19 0 90 1260 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_074400416 chr19:45708740-45721287 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 416 4 311 16 0 90 1260 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_151000531 chr19:45712887-45737834 Sample_02_1510 Lung H3122_LR_Pano 531 13 575 21 0 69 888 FBXO46,BHMG1,MIR642B,DMPK,GIPR,SIX5,SNRPD2,QPCTL,MIR642A
SE_02_103100320 chr19:45714562-45762724 Sample_02_1031 Head and neck SCC1 contol 320 13 1128 71 0 78 1492 FBXO46,BHMG1,MIR642B,QPCTL,DMWD,DMPK,GIPR,SIX5,SNRPD2,MIR642A
SE_02_074300210 chr19:45714799-45728698 Sample_02_0743 Embryo ES derived mesoderm_day2 210 7 313 15 0 16 446 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_024200942 chr19:45715577-45723611 Sample_02_0242 Colon V481 942 2 173 11 0 14 350 FBXO46,SIX5,SNRPD2,MIR642A,MIR642B,QPCTL,GIPR
SE_02_006500899 chr19:45715758-45731592 Sample_02_0065 Embryo KO2-Late_G1 899 2 335 16 0 35 461 FBXO46,SIX5,SNRPD2,DMPK,MIR642A,MIR642B,QPCTL,GIPR
SE_00_001800258 chr19:45715780-45731094 Sample_00_0018 Dermal fibroblasts iPS-18axian 258 2 324 15 0 32 456 FBXO46,SIX5,SNRPD2,DMPK,MIR642A,MIR642B,QPCTL,GIPR
SE_02_126301585 chr19:45715869-45723969 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1585 3 167 11 0 14 326 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_088601211 chr19:45715872-45753357 Sample_02_0886 Skin foreskin_ p63KLF4 1211 9 830 51 0 54 684 FBXO46,BHMG1,MIR642B,QPCTL,DMWD,DMPK,GIPR,SIX5,SNRPD2,MIR642A
SE_02_041500358 chr19:45716063-45722458 Sample_02_0415 Stomach YCC22 358 2 137 9 0 14 253 FBXO46,SIX5,SNRPD2,MIR642A,MIR642B,QPCTL,GIPR
SE_02_130800920 chr19:45716151-45722972 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 920 2 149 10 0 14 247 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_047500919 chr19:45716215-45723553 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 919 3 156 10 0 14 280 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_130900888 chr19:45716257-45722627 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 888 2 136 9 0 14 238 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_146001327 chr19:45716284-45740161 Sample_02_1460 Blood Mutz-3 1327 4 523 24 0 44 471 FBXO46,BHMG1,MIR642B,DMPK,GIPR,SIX5,SNRPD2,QPCTL,MIR642A
SE_02_035200488 chr19:45716334-45740522 Sample_02_0352 Colon HCT116 488 5 526 24 0 44 466 FBXO46,SIX5,SNRPD2,DMPK,MIR642A,MIR642B,QPCTL,GIPR
SE_02_113100427 chr19:45716405-45753214 Sample_02_1131 Pancreas T3M4 wt 427 11 817 50 0 54 616 FBXO46,BHMG1,MIR642B,QPCTL,DMWD,DMPK,GIPR,SIX5,SNRPD2,MIR642A
SE_02_137200598 chr19:45716426-45723823 Sample_02_1372 Pancreas PSN1-untreated 598 5 153 10 0 14 254 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_019100235 chr19:45716513-45722097 Sample_02_0191 Stomach SNU719 235 3 116 7 0 14 196 FBXO46,SIX5,SNRPD2,MIR642A,MIR642B,QPCTL,GIPR
SE_02_066500332 chr19:45716519-45723458 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 332 3 150 10 0 14 220 FBXO46,MIR642B,QPCTL,GIPR,SIX5,SNRPD2,BHMG1,MIR642A
SE_02_103200682 chr19:45735631-45762745 Sample_02_1032 Head and neck SCC1 JQ1 682 11 656 54 0 34 877 BHMG1,QPCTL,DMPK,SIX5,SNRPD2,DMWD,FBXO46
SE_02_068600455 chr19:45770984-45783477 Sample_02_0686 Lung NCI-H128_no infection 455 3 418 24 1 145 1741 DMPK,DMWD,RSPH6A,SIX5,BHMG1,FBXO46
SE_02_092101200 chr19:45779810-45785830 Sample_02_0921 Heart embryonic heart_CS22 1200 1 198 15 1 80 1059 DMPK,DMWD,RSPH6A,SIX5,BHMG1,FBXO46
SE_02_114500590 chr19:45784548-45821047 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 590 12 1129 115 3 190 2935 RSPH6A,SYMPK,DMWD,FOXA3,DMPK,SIX5
SE_02_077502376 chr19:45789862-45834333 Sample_02_0775 Pancreas EndoC-BH1_SE 2376 16 1408 154 2 165 3693 RSPH6A,SYMPK,DMWD,FOXA3,DMPK,SIX5,NANOS2
SE_02_123900264 chr19:45809338-45827479 Sample_02_1239 Skin Waga_virus_positive 264 8 588 73 1 79 2235 RSPH6A,SYMPK,DMWD,FOXA3,DMPK,SIX5
SE_02_001700614 chr19:45814344-45818863 Sample_02_0017 Embryo H9_ESC 614 1 150 8 0 38 916 RSPH6A,SYMPK,SIX5,DMPK,DMWD,FOXA3
SE_02_107100279 chr19:45817688-45830360 Sample_02_1071 Blood Jurkat_WT 279 9 418 47 1 54 1750 SYMPK,DMWD,FOXA3,DMPK,SIX5,RSPH6A
Genomic distribution of SEs associated with SIX5
Genome Browser

The strength of the tissue affected by the gene

Expression of SIX5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)