SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000189410
Gene: SH2D5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:20719731-20732837 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087200497 chr1:20664522-20700557 Sample_02_0872 Colon HCT116_siCtrl-5FU 497 12 1151 120 6 47 1141 KIF17,SH2D5,PINK1-AS,MIR6084,DDOST,PINK1
SE_02_054800405 chr1:20676964-20696975 Sample_02_0548 Blood THP-1_24h with EtOH 405 3 684 63 2 24 651 KIF17,SH2D5,PINK1-AS,MIR6084,DDOST,PINK1
SE_02_039600163 chr1:20683685-20740872 Sample_02_0396 Skin NHEK-D 163 15 1789 195 7 150 3104 SH2D5,KIF17,HP1BP3,DDOST
SE_02_104600819 chr1:20683809-20730487 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 819 27 1509 168 6 143 2823 SH2D5,KIF17,DDOST,PINK1-AS
SE_02_021601312 chr1:20693519-20710848 Sample_02_0216 Skin NHEK_scramble 1312 4 571 86 2 25 374 KIF17,DDOST,SH2D5
SE_02_037800116 chr1:20695547-20714191 Sample_02_0378 Skeletal muscle SCMC 116 3 598 90 1 32 476 KIF17,DDOST,SH2D5
SE_02_114500364 chr1:20695568-20735352 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 364 16 1226 142 5 136 2558 SH2D5,KIF17,DDOST,PINK1-AS
SE_02_141300163 chr1:20695613-20732012 Sample_02_1413 Muscle RH4_sgBRG1 163 13 1124 134 4 132 2281 SH2D5,KIF17,DDOST,PINK1-AS
SE_02_006900562 chr1:20696002-20701232 Sample_02_0069 Brain SF268 562 2 176 29 0 0 82 KIF17,DDOST,SH2D5
SE_02_037400279 chr1:20696106-20712556 Sample_02_0374 Skeletal muscle RMS209 279 3 526 82 1 29 374 KIF17,DDOST,SH2D5
SE_02_093200452 chr1:20696136-20729700 Sample_02_0932 Embryo H9 WT_1 452 8 1042 126 4 127 2277 SH2D5,KIF17,DDOST,PINK1-AS
SE_02_107800467 chr1:20696357-20712548 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 467 9 514 79 1 29 374 KIF17,DDOST,SH2D5,PINK1-AS
SE_02_107900205 chr1:20696648-20713749 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 205 11 527 81 1 32 473 KIF17,DDOST,SH2D5,PINK1-AS
SE_02_010600314 chr1:20723413-20737102 Sample_02_0106 Skin NHEK_M 314 3 398 32 4 56 1113 SH2D5,KIF17,HP1BP3
SE_00_003100776 chr1:20723850-20732041 Sample_00_0031 Placenta placenta 776 1 243 18 3 37 732 SH2D5,KIF17
SE_02_048000309 chr1:20724228-20750033 Sample_02_0480 Gingival epithelial HGEP 309 9 696 53 4 76 1383 SH2D5,HP1BP3,KIF17
SE_02_072700871 chr1:20724753-20754296 Sample_02_0727 Fetal lung IMR90_Etoposide 871 6 796 62 3 68 1297 SH2D5,HP1BP3,KIF17
SE_02_107300271 chr1:20724862-20740909 Sample_02_1073 Keratinocyte keratinocytes stem cell 271 5 448 39 3 29 784 SH2D5,HP1BP3,KIF17
SE_02_020901277 chr1:20725073-20754357 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1277 5 792 61 3 67 1286 SH2D5,HP1BP3,KIF17
SE_02_094600681 chr1:20725397-20740473 Sample_02_0946 Tongue HN12 681 3 418 33 3 27 784 SH2D5,HP1BP3,KIF17
SE_02_112100803 chr1:20725401-20739740 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 803 7 401 30 3 27 784 SH2D5,HP1BP3,KIF17
SE_02_045100569 chr1:20725452-20754044 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 569 7 769 61 3 65 1271 SH2D5,HP1BP3,KIF17
SE_02_021601402 chr1:20728283-20736293 Sample_02_0216 Skin NHEK_scramble 1402 3 218 17 1 11 281 SH2D5,KIF17
SE_02_006900296 chr1:20729961-20741010 Sample_02_0069 Brain SF268 296 3 297 28 1 11 281 SH2D5,KIF17,HP1BP3
SE_02_104901142 chr1:20730027-20790616 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1142 22 1593 130 3 116 1722 SH2D5,HP1BP3,KIF17
SE_02_103600187 chr1:20739863-20891836 Sample_02_1036 Mammary gland HCC70_XY018 187 62 3644 297 4 234 2336 EIF4G3,HP1BP3,SH2D5,KIF17
SE_02_108400130 chr1:20749574-20788728 Sample_02_1084 Blood KBM7-derived near haploid cells 130 17 1039 89 2 80 1047 HP1BP3,SH2D5,KIF17
SE_02_138300576 chr1:20760393-20788943 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 576 5 733 60 2 71 775 HP1BP3,SH2D5,KIF17
SE_02_138100622 chr1:20764754-20789025 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 622 7 622 45 2 70 775 HP1BP3,SH2D5,KIF17
SE_02_138200488 chr1:20766690-20789233 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 488 7 556 39 2 67 728 HP1BP3,SH2D5,KIF17
SE_02_111101141 chr1:20767209-20789199 Sample_02_1111 Other HGrC1_SMAD2/3KO 1141 6 539 39 2 67 728 HP1BP3,SH2D5,KIF17
SE_02_101701668 chr1:20768105-20788920 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1668 5 507 36 2 66 698 HP1BP3,SH2D5
SE_02_055500815 chr1:20776578-20788675 Sample_02_0555 Other HAP1_WT 815 5 290 20 1 49 466 HP1BP3,SH2D5
SE_02_018500984 chr1:20779707-20788969 Sample_02_0185 Skin UACC257 984 4 218 12 0 48 428 HP1BP3,SH2D5
SE_02_058400763 chr1:20781399-20788449 Sample_02_0584 Lung H1299 WT 763 3 166 10 0 31 338 HP1BP3,SH2D5
SE_02_103500362 chr1:20781675-20883530 Sample_02_1035 Mammary gland HCC70_Vehicle 362 22 2359 181 2 149 1193 EIF4G3,HP1BP3,SH2D5
SE_02_148000952 chr1:20782613-20789159 Sample_02_1480 Bone MHH-ES-1 952 4 156 8 0 31 338 HP1BP3,SH2D5
Genomic distribution of SEs associated with SH2D5
Genome Browser

The strength of the tissue affected by the gene

Expression of SH2D5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)