SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000168066
Gene: SF1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:64764606-64778786 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_096900023 chr11:64606928-64732359 Sample_02_0969 Brain H3.3K27M_PL637 23 28 3003 178 42 1209 4302 NRXN2,RASGRP2,SF1,SLC22A12,PYGM
SE_02_030400380 chr11:64674510-64730167 Sample_02_0304 Neuroblastoma N206 380 9 1333 84 16 540 1409 NRXN2,RASGRP2,SF1,PYGM
SE_02_110500363 chr11:64675112-64735570 Sample_02_1105 Brain NBL-S 363 23 1446 88 16 554 1595 NRXN2,RASGRP2,SF1,PYGM
SE_02_118400178 chr11:64675380-64732651 Sample_02_1184 Brain GBM13 178 19 1369 86 16 541 1459 NRXN2,RASGRP2,SF1,PYGM
SE_02_002200604 chr11:64723132-64746566 Sample_02_0022 Blood CD8donorA 604 4 580 30 3 313 2564 NRXN2,RASGRP2,PYGM,SF1
SE_02_034200970 chr11:64724863-64747691 Sample_02_0342 Liver HSPCs_F0 970 3 578 30 3 287 2725 RASGRP2,PYGM,SF1,NRXN2
SE_02_107100205 chr11:64736705-64746828 Sample_02_1071 Blood Jurkat_WT 205 2 261 13 1 212 1787 RASGRP2,PYGM,SF1,NRXN2
SE_02_104900477 chr11:64738881-64748482 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 477 1 244 16 1 197 1816 RASGRP2,PYGM,SF1,NRXN2
SE_02_082700873 chr11:64739585-64752131 Sample_02_0827 Stomach normal gastric 873 3 332 21 1 216 2021 RASGRP2,PYGM,SF1,NRXN2
SE_02_058000878 chr11:64740335-64748428 Sample_02_0580 Blood HEL_sgSIK3e4 878 3 204 11 1 160 1568 RASGRP2,PYGM,SF1,NRXN2
SE_02_025600636 chr11:64740401-64748816 Sample_02_0256 Peripheral blood MV411 636 1 206 11 1 160 1562 RASGRP2,PYGM,SF1,NRXN2
SE_02_057900679 chr11:64740527-64748547 Sample_02_0579 Blood HEL_sgNeg2 679 4 198 11 1 160 1553 RASGRP2,PYGM,SF1,NRXN2
SE_02_034300537 chr11:64740663-64748691 Sample_02_0343 Bone marrow HSPC_A0 537 2 193 11 1 160 1528 RASGRP2,PYGM,SF1,NRXN2
SE_02_099300727 chr11:64741034-64746272 Sample_02_0993 Blood MOLM-13_empty 727 2 131 8 1 131 1177 RASGRP2,SF1,NRXN2,PYGM
SE_02_083400516 chr11:64741117-64747416 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 516 1 158 10 1 154 1414 RASGRP2,PYGM,SF1,NRXN2
SE_01_008400446 chr11:64741166-64749662 Sample_01_0084 Spleen spleen 446 1 202 14 1 154 1441 RASGRP2,PYGM,SF1,NRXN2
SE_02_057600879 chr11:64741170-64747438 Sample_02_0576 Blood HEL_sgLKB1e2 879 1 157 10 1 154 1411 RASGRP2,PYGM,SF1,NRXN2
SE_02_083300367 chr11:64741219-64747119 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 367 1 138 8 1 148 1343 RASGRP2,PYGM,SF1,NRXN2
SE_02_083600470 chr11:64741280-64747827 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 470 2 150 8 1 154 1422 RASGRP2,PYGM,SF1,NRXN2
SE_02_082100218 chr11:64741399-64748590 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 218 2 160 9 1 154 1386 RASGRP2,PYGM,SF1,NRXN2
SE_00_005500550 chr11:64741615-64748401 Sample_00_0055 Spleen spleen 34y 550 3 153 9 1 151 1332 RASGRP2,PYGM,SF1,NRXN2
SE_02_057700473 chr11:64741625-64746543 Sample_02_0577 Blood MOLM13_empty 473 1 113 6 1 133 1114 RASGRP2,PYGM,SF1,NRXN2
SE_01_005200436 chr11:64741642-64748088 Sample_01_0052 Blood neutrophil 436 1 145 8 1 151 1324 RASGRP2,PYGM,SF1,NRXN2
SE_02_025500521 chr11:64741648-64747665 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 521 1 140 8 1 151 1320 RASGRP2,PYGM,SF1,NRXN2
SE_02_058100415 chr11:64741682-64747084 Sample_02_0581 Blood MOLM13_empty_HG 415 1 123 8 1 145 1211 RASGRP2,PYGM,SF1,NRXN2
SE_02_057400690 chr11:64741693-64746638 Sample_02_0574 Blood MOLM-13_sgNeg2 690 2 112 6 1 134 1118 RASGRP2,PYGM,SF1,NRXN2
SE_02_045900618 chr11:64741737-64747012 Sample_02_0459 Blood ME-1_DMSO_6h 618 1 121 6 1 143 1199 RASGRP2,PYGM,SF1,NRXN2
SE_02_099500738 chr11:64741770-64746536 Sample_02_0995 Blood MOLM-13_empty vector 738 2 109 6 1 133 1095 RASGRP2,PYGM,SF1,NRXN2
SE_02_058200485 chr11:64741771-64746822 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 485 1 116 6 1 141 1161 RASGRP2,PYGM,SF1,NRXN2
SE_02_092700620 chr11:64741778-64748581 Sample_02_0927 Peripheral blood neutrophils_US 620 2 152 9 1 151 1314 RASGRP2,PYGM,SF1,NRXN2
SE_02_103400436 chr11:64741801-64747572 Sample_02_1034 Blood AML cell 436 1 137 8 1 151 1314 RASGRP2,PYGM,SF1,NRXN2
SE_02_082000332 chr11:64741812-64746707 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 332 1 111 6 1 137 1135 RASGRP2,PYGM,SF1,NRXN2
SE_02_109800826 chr11:64741823-64747026 Sample_02_1098 Blood THP1_DMSO_noPMA 826 1 120 6 1 143 1198 RASGRP2,PYGM,SF1,NRXN2
SE_02_036200564 chr11:64741856-64747747 Sample_02_0362 Haematopoietic and lymphoid tissue REH 564 1 137 8 1 151 1301 RASGRP2,PYGM,SF1,NRXN2
SE_02_061700800 chr11:64741951-64747390 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 800 1 131 8 1 151 1241 RASGRP2,PYGM,SF1,NRXN2
SE_02_082200605 chr11:64741968-64746873 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 605 2 113 6 1 141 1125 RASGRP2,PYGM,SF1,NRXN2
SE_02_046100694 chr11:64742001-64746108 Sample_02_0461 Blood MV-4-11-B cells 694 1 95 6 1 118 960 RASGRP2,SF1,NRXN2,PYGM
SE_01_010401088 chr11:64742053-64746907 Sample_01_0104 Lung upper lobe of left lung 1088 1 112 6 1 139 1117 RASGRP2,PYGM,SF1,NRXN2
SE_02_057800609 chr11:64742089-64746392 Sample_02_0578 Blood MOLM-13_sgSIK3e4 609 1 96 6 1 129 993 RASGRP2,PYGM,SF1,NRXN2
SE_02_059100461 chr11:64742130-64746706 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 461 1 102 6 1 133 1061 RASGRP2,PYGM,SF1,NRXN2
SE_02_143100534 chr11:64742138-64747758 Sample_02_1431 Blood T cell 534 1 129 8 1 147 1239 RASGRP2,PYGM,SF1,NRXN2
SE_02_099400864 chr11:64742143-64746517 Sample_02_0994 Blood MOLM13_SIK3TQ 864 1 99 6 1 129 1017 RASGRP2,PYGM,SF1,NRXN2
SE_02_057500817 chr11:64742151-64746488 Sample_02_0575 Blood MOLM13_sgLKB1e2 817 1 99 6 1 129 1009 RASGRP2,PYGM,SF1,NRXN2
SE_02_134200272 chr11:64742244-64746254 Sample_02_1342 Blood NB4 272 1 90 6 1 123 915 RASGRP2,SF1,NRXN2,PYGM
SE_02_034900622 chr11:64742427-64748523 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 622 1 133 9 1 141 1204 RASGRP2,PYGM,SF1,NRXN2
SE_02_102800444 chr11:64742449-64746232 Sample_02_1028 Blood HL-60_WT 444 1 87 6 1 115 903 RASGRP2,SF1,NRXN2,PYGM
SE_02_075000678 chr11:64743036-64747262 Sample_02_0750 Lymphoma Rec-1_GSI 678 1 91 7 1 122 1021 RASGRP2,PYGM,SF1,NRXN2
SE_02_104901174 chr11:64757733-64764571 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1174 1 220 14 2 55 629 PYGM,RASGRP2,SF1,MEN1,NRXN2,MAP4K2
SE_02_104800623 chr11:64780995-64808194 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 623 14 733 26 2 206 3218 MAP4K2,MEN1,RASGRP2,SF1,CDC42BPG,PYGM
SE_02_077502146 chr11:64781510-64799060 Sample_02_0775 Pancreas EndoC-BH1_SE 2146 5 467 15 2 64 1169 MAP4K2,RASGRP2,SF1,MEN1,CDC42BPG,PYGM
SE_02_114400291 chr11:64790079-64800292 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 291 4 287 5 1 61 1092 MAP4K2,RASGRP2,SF1,MEN1,CDC42BPG,PYGM
SE_02_104900874 chr11:64795994-64803130 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 874 1 226 6 0 86 1452 MAP4K2,SF1,MEN1,CDC42BPG,PYGM
SE_02_021600024 chr11:64817753-64889554 Sample_02_0216 Skin NHEK_scramble 24 20 2185 159 2 461 4819 CDC42BPG,EHD1,SF1,GPHA2,MEN1,PPP2R5B,MAP4K2,ATG2A,MIR194-2,MIR192
SE_02_007300379 chr11:64823373-64874814 Sample_02_0073 Other 90-8TL_DMSO 379 8 1619 125 1 396 4081 CDC42BPG,EHD1,SF1,MEN1,PPP2R5B,MAP4K2,ATG2A,MIR194-2,MIR192
SE_02_114400087 chr11:64826624-64842391 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 87 10 536 32 0 189 2746 CDC42BPG,SF1,EHD1,MEN1,MAP4K2,MIR192,MIR194-2
Genomic distribution of SEs associated with SF1
Genome Browser

The strength of the tissue affected by the gene

Expression of SF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)