SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000185917
Gene: SETD4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr21:36034541-36079389 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104603217 chr21:36011693-36040192 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3217 7 789 82 0 33 342 SETD4,LINC01436,CBR1,LOC101928269
SE_00_004900722 chr21:36063227-36079066 Sample_00_0049 Small intestine small intestine 30y 722 12 448 60 2 34 592 LOC100133286,CBR1,SETD4
SE_00_003100879 chr21:36064857-36098399 Sample_00_0031 Placenta placenta 879 5 961 130 4 34 694 CBR1,SETD4,CBR3
SE_02_100000352 chr21:36065177-36090141 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 352 6 674 98 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_121300861 chr21:36065732-36089791 Sample_02_1213 Brain GBM31 861 13 659 96 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_136200711 chr21:36065767-36130799 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 711 17 1832 246 9 34 791 LOC100133286,CBR1,SETD4,CBR3,CBR3-AS1,DOPEY2
SE_02_118500688 chr21:36065779-36113639 Sample_02_1185 Brain GBM14 688 9 1388 194 7 34 708 LOC100133286,CBR1,SETD4,CBR3,CBR3-AS1
SE_02_119601092 chr21:36065845-36089653 Sample_02_1196 Brain GBM32 1092 13 653 96 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_118900510 chr21:36065852-36088851 Sample_02_1189 Brain GBM22 510 6 641 95 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_120500892 chr21:36065852-36089785 Sample_02_1205 Brain NB3 892 9 656 96 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_120300876 chr21:36066073-36089554 Sample_02_1203 Brain NB1 876 9 643 94 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_120400637 chr21:36066187-36090282 Sample_02_1204 Brain NB2 637 8 652 95 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_118200255 chr21:36069147-36089690 Sample_02_1182 Brain GBM11 255 8 574 88 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_117300963 chr21:36069205-36089606 Sample_02_1173 Brain GBM01 963 11 571 88 4 34 643 LOC100133286,CBR1,CBR3,SETD4
SE_02_117700616 chr21:36069579-36089138 Sample_02_1177 Brain GBM05 616 3 560 88 4 34 627 LOC100133286,CBR1,CBR3,SETD4
SE_02_035000709 chr21:36069581-36088368 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 709 7 546 83 3 34 627 CBR1,SETD4,CBR3
SE_02_121100713 chr21:36071015-36089124 Sample_02_1211 Brain GBM21 713 7 513 83 3 19 404 LOC100133286,CBR1,CBR3,SETD4
SE_02_074000276 chr21:36073291-36113440 Sample_02_0740 Muscle RH3 276 11 1162 167 5 6 158 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_136100677 chr21:36074469-36130913 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 677 17 1593 215 7 6 235 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,DOPEY2
SE_02_039700273 chr21:36089435-36113502 Sample_02_0397 Mammary gland CAL51-MCF-7 273 7 727 97 3 0 65 CBR1,SETD4,CBR3
SE_02_101701235 chr21:36089457-36113411 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1235 5 726 97 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,RUNX1
SE_02_117200130 chr21:36089933-36111552 Sample_02_1172 Embryo H9 WT 130 4 668 85 2 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,RUNX1
SE_02_075200286 chr21:36090743-36112787 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 286 4 678 90 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_101501027 chr21:36091109-36113458 Sample_02_1015 Embryo H9_ Undifferentiated 1027 4 677 93 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,RUNX1
SE_02_075500095 chr21:36091255-36112819 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 95 3 656 89 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_004300535 chr21:36091661-36105865 Sample_02_0043 Embryo endodermal CyT49_ES_D2 535 6 443 65 1 0 65 CBR1,SETD4,CBR3
SE_02_157000137 chr21:36091730-36130648 Sample_02_1570 iPSCs EiPSC 137 10 1102 139 5 0 148 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,DOPEY2
SE_02_157200076 chr21:36091730-36130722 Sample_02_1572 iPSCs FiPSC 76 10 1106 140 5 0 148 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1,DOPEY2
SE_02_156700217 chr21:36091744-36112981 Sample_02_1567 iPSCs CiPSC 217 8 649 88 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_116100110 chr21:36091840-36106522 Sample_02_1161 Embryo H1_shZNF587 110 7 448 63 1 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_004200121 chr21:36094544-36114284 Sample_02_0042 Embryo endodermal CyT49_ES_D0 121 3 596 84 3 0 65 CBR1,SETD4,CBR3
SE_02_145700013 chr21:36094635-36112846 Sample_02_1457 Embryo HUES8 WT 13 5 555 78 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_067500164 chr21:36094730-36111163 Sample_02_0675 Embryo H1 hESC-derived neural progenitor cells_Smad_0hr 164 12 497 65 2 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_086000043 chr21:36094920-36112875 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 43 6 543 78 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_101600479 chr21:36095151-36113260 Sample_02_1016 Embryo H9_Mesendoderm_24h 479 4 541 79 3 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_116000436 chr21:36095166-36106019 Sample_02_1160 Embryo H1_shLuc 436 5 326 55 1 0 65 LOC100133286,CBR3,SETD4,CBR1
SE_02_056000170 chr21:36095369-36105586 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 170 5 310 52 1 0 65 LOC100133286,CBR3,SETD4,CBR1
SE_02_055900444 chr21:36095520-36107060 Sample_02_0559 iPSCs FX52 iPSCs dC-T 444 6 335 52 1 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_074200323 chr21:36095723-36105772 Sample_02_0742 Embryo ESCs_day0 323 7 307 51 1 0 65 LOC100133286,CBR3,SETD4,CBR1
SE_02_086100162 chr21:36095891-36106644 Sample_02_0861 iPSCs SAH_WT 162 7 315 48 1 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_067800285 chr21:36095912-36106037 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 285 9 305 48 1 0 65 LOC100133286,CBR3,SETD4,CBR1
SE_02_074300451 chr21:36095998-36112652 Sample_02_0743 Embryo ES derived mesoderm_day2 451 6 493 67 2 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_01_003100117 chr21:36096084-36105656 Sample_01_0031 Skin GM23338 117 2 288 46 1 0 65 CBR1,SETD4,CBR3
SE_02_098900830 chr21:36096436-36151016 Sample_02_0989 Kidney kidney cortex_WT 830 10 1558 214 7 50 836 LOC100133286,CBR3-AS1,CBR3,SETD4,CBR1,DOPEY2
SE_02_052900042 chr21:36096473-36105321 Sample_02_0529 Heart Heart-derived sendai virus reprogrammed iPSC 42 7 265 45 1 0 65 LOC100133286,CBR3,SETD4,CBR1
SE_02_067700187 chr21:36096578-36111255 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 187 10 436 54 2 0 65 LOC100133286,SETD4,CBR1,CBR3,CBR3-AS1
SE_02_044500254 chr21:36103292-36151158 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 254 12 1354 180 7 50 771 LOC100133286,CBR3-AS1,CBR3,SETD4,CBR1,DOPEY2
Genomic distribution of SEs associated with SETD4
Genome Browser

The strength of the tissue affected by the gene

Expression of SETD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)