SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000277957
Gene: SENP3-EIF4A1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:7563287-7578715 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602718 chr17:7500596-7551737 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2718 8 1644 186 7 234 2020 TNFSF12-TNFSF13,TNFSF12,POLR2A,EIF4A1,SNORA67,TNFSF13,CD68,SNORD10,SENP3-EIF4A1,SNORA48,SLC35G6,SOX15,ZBTB4,MPDU1
SE_02_133000738 chr17:7541470-7560913 Sample_02_1330 Blood AMU-AML1 738 7 517 70 6 146 1483 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_00_005501030 chr17:7544411-7560626 Sample_00_0055 Spleen spleen 34y 1030 4 434 54 6 142 1435 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_091501241 chr17:7545154-7560446 Sample_02_0915 Heart left ventricle_DCM_LV1371 1241 4 396 46 6 134 1397 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_103602190 chr17:7545264-7553376 Sample_02_1036 Mammary gland HCC70_XY018 2190 4 217 22 3 62 438 TNFSF12-TNFSF13,TNFSF12,EIF4A1,SNORA67,TNFSF13,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_131500333 chr17:7548255-7560612 Sample_02_1315 Brain hMGLs_INPP5D SNP 333 2 319 40 6 135 1433 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_131200372 chr17:7549846-7560460 Sample_02_1312 Brain hMGLs_WT 372 4 268 36 4 80 1159 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_131800391 chr17:7550572-7561086 Sample_02_1318 Brain hMGLs_SORL1-A528T 391 3 267 36 4 83 1199 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_131700345 chr17:7550924-7560461 Sample_02_1317 Brain hMGLs_SORL1-KO 345 4 243 34 4 76 1013 TNFSF12-TNFSF13,TNFSF13,TNFSF12,EIF4A1,SNORA67,CD68,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
SE_02_102600346 chr17:7579028-7585475 Sample_02_1026 Esophagus KYSE200 346 1 195 13 3 28 736 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_113000699 chr17:7579034-7589310 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 699 3 293 23 4 62 1473 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_103000474 chr17:7579039-7586294 Sample_02_1030 Colon DKO 474 1 210 15 3 32 876 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_051500204 chr17:7579075-7589564 Sample_02_0515 Esophagus KYSE140 204 2 302 23 4 76 1512 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_050300202 chr17:7579075-7589565 Sample_02_0503 Esophagus KYSE140_1 202 2 302 23 4 76 1513 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_109500260 chr17:7579116-7589442 Sample_02_1095 Blood CD34 Erythroid cells_Don002 260 1 292 23 4 67 1481 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_066300612 chr17:7579119-7586124 Sample_02_0663 Thyroid TT 612 1 201 15 3 32 824 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_102700197 chr17:7579167-7589997 Sample_02_1027 Esophagus KYSE180_1 197 2 307 24 4 76 1599 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_119000434 chr17:7579189-7585019 Sample_02_1190 Brain GBM24 434 1 177 13 3 28 706 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_04_000101003 chr17:7579250-7588928 Sample_04_0001 Blood heat shocked K562 1003 1 271 22 4 58 1347 CD68,SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_047900364 chr17:7579569-7591853 Sample_02_0479 Head and neck SCC25 364 3 319 24 4 112 1840 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_119601326 chr17:7579591-7588073 Sample_02_1196 Brain GBM32 1326 2 224 19 4 48 1141 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_157301153 chr17:7579619-7588778 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1153 2 242 21 4 54 1290 MPDU1,SOX15,CD68,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_133800176 chr17:7580635-7589409 Sample_02_1338 Esophagus KYSE180 176 2 227 21 4 54 1197 MPDU1,SOX15,CD68,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_048000559 chr17:7580705-7591688 Sample_02_0480 Gingival epithelial HGEP 559 2 274 23 4 88 1551 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_068500168 chr17:7581272-7584957 Sample_02_0685 Lung NCI-H1048_no infection 168 1 101 10 3 12 314 CD68,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_064800415 chr17:7581317-7591320 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 415 2 256 22 4 71 1329 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_093801192 chr17:7581375-7598200 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1192 5 405 29 4 158 2080 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,ATP1B2,SNORD10
SE_02_064700432 chr17:7581406-7591030 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 432 2 250 22 4 65 1268 MPDU1,SOX15,CD68,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_074701103 chr17:7581414-7611016 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1103 10 758 64 7 180 2425 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,ATP1B2,SNORD10
SE_02_064900294 chr17:7581432-7591396 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 294 2 255 22 4 73 1327 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_109600356 chr17:7581450-7589385 Sample_02_1096 Blood CD34 Erythroid cells_Don003 356 1 205 20 4 49 1026 MPDU1,SOX15,CD68,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_065200403 chr17:7581453-7591184 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 403 2 250 22 4 67 1283 MPDU1,SOX15,CD68,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_065001077 chr17:7581580-7591473 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 1077 3 251 20 2 77 1315 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_103501199 chr17:7581611-7605306 Sample_02_1035 Mammary gland HCC70_Vehicle 1199 6 606 52 4 174 2257 CD68,MPDU1,SOX15,FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,ATP1B2,SNORD10
SE_02_046100777 chr17:7582142-7589432 Sample_02_0461 Blood MV-4-11-B cells 777 3 184 14 2 50 908 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_136300322 chr17:7582195-7589423 Sample_02_1363 Blood Hudep2 322 1 182 14 2 48 900 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_054501071 chr17:7582665-7588827 Sample_02_0545 Bone marrow K562 WT 1071 2 151 11 2 39 752 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_101900168 chr17:7582677-7586275 Sample_02_1019 Umbilical cord HUDEP2_Day 168 1 83 4 1 14 256 MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,FXR2
SE_02_088601744 chr17:7585802-7592026 Sample_02_0886 Skin foreskin_ p63KLF4 1744 2 154 11 1 87 1162 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_158401469 chr17:7586524-7591805 Sample_02_1584 Brain U87 GBM_Mock 1469 1 137 10 1 83 986 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_061001212 chr17:7586570-7592439 Sample_02_0610 Liposarcoma MLS 1765-92 1212 1 145 11 1 85 1079 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_102500547 chr17:7586645-7591907 Sample_02_1025 Esophagus KYSE150 547 1 137 10 1 84 990 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_102600465 chr17:7586717-7591026 Sample_02_1026 Esophagus KYSE200 465 1 121 9 1 47 769 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_154100795 chr17:7586836-7591852 Sample_02_1541 Nasopharyngeal HNE1 795 1 133 10 1 76 937 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_154000690 chr17:7586873-7591590 Sample_02_1540 Nasopharyngeal HK1 690 1 128 10 1 59 863 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_094600732 chr17:7586959-7591571 Sample_02_0946 Tongue HN12 732 1 125 10 1 58 844 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_064501513 chr17:7587016-7591766 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1513 1 128 10 1 72 881 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_064400784 chr17:7587052-7590935 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 784 2 115 9 1 40 694 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_02_064601027 chr17:7587109-7591531 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1027 2 121 8 1 56 787 SOX15,FXR2,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10
SE_02_130500469 chr17:7587310-7590063 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 469 1 85 7 1 30 571 SOX15,MPDU1,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,FXR2
SE_00_004800408 chr17:7590301-7592348 Sample_00_0048 Embryo neuronal stem cell originated from H1 408 1 34 2 0 40 287 FXR2,SHBG,EIF4A1,SNORA67,TNFSF13,SAT2,CD68,TNFSF12-TNFSF13,SENP3-EIF4A1,SNORA48,SNORD10,SOX15,MPDU1
Genomic distribution of SEs associated with SENP3-EIF4A1
Genome Browser

The strength of the tissue affected by the gene

Expression of SENP3-EIF4A1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)