SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000185986
Gene: SDHAP3 Gene type: transcribed_unprocessed_pseudogene
Strand: - External links:
Genomic region: chr5:1567495-1594620 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039600544 chr5:1466632-1566798 Sample_02_0396 Skin NHEK-D 544 36 3627 283 15 76 1301 LPCAT1,SDHAP3,SLC6A3
SE_01_009000483 chr5:1474928-1569840 Sample_01_0090 Lung upper-lobe-of-left-lung 483 17 3451 272 14 64 1093 LPCAT1,SDHAP3,SLC6A3
SE_02_119500464 chr5:1476065-1566852 Sample_02_1195 Brain GBM29 464 29 3298 255 13 64 869 MIR6075,LPCAT1,SLC6A3,SDHAP3
SE_02_117700630 chr5:1477696-1568407 Sample_02_1177 Brain GBM05 630 18 3289 265 14 60 965 MIR6075,LPCAT1,SLC6A3,SDHAP3
SE_02_105000074 chr5:1488874-1571298 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 74 29 2988 250 13 48 785 MIR6075,LPCAT1,SLC6A3,SDHAP3
SE_02_117400440 chr5:1494575-1564653 Sample_02_1174 Brain GBM02 440 22 2490 193 11 46 449 MIR6075,LPCAT1,SLC6A3,SDHAP3
SE_01_010400436 chr5:1494915-1569386 Sample_01_0104 Lung upper lobe of left lung 436 20 2654 218 13 35 601 MIR6075,LPCAT1,SLC6A3,SDHAP3,CLPTM1L
SE_00_002200071 chr5:1497301-1569054 Sample_00_0022 Lung lung_30y 71 23 2538 210 12 35 540 LPCAT1,SDHAP3
SE_02_116800102 chr5:1500497-1571390 Sample_02_1168 Biliary H69_TGF Vehicle_2 102 19 2531 200 11 31 564 MIR6075,LPCAT1,SDHAP3
SE_02_154100125 chr5:1506311-1546860 Sample_02_1541 Nasopharyngeal HNE1 125 14 1338 74 6 28 214 MIR6075,LPCAT1,SDHAP3
SE_02_116900394 chr5:1511277-1570824 Sample_02_1169 Biliary H69_TGF beta_16h_2 394 20 2060 156 9 25 438 LPCAT1,MIR6075,SDHAP3
SE_03_001500578 chr5:1511632-1569074 Sample_03_0015 Lung A549_dexamethasone_8h 578 9 1969 149 9 25 418 LPCAT1,SDHAP3
SE_02_016500174 chr5:1511792-1569478 Sample_02_0165 Lung H2087_LCC2 174 10 1981 150 9 25 438 LPCAT1,SDHAP3
SE_02_119100845 chr5:1513089-1566809 Sample_02_1191 Brain GBM25 845 16 1829 134 7 25 214 LPCAT1,MIR6075,SDHAP3
SE_02_116600426 chr5:1513360-1570244 Sample_02_1166 Biliary H69_TGF beta_16h_1 426 20 1946 150 8 25 438 LPCAT1,MIR6075,SDHAP3
SE_02_097100345 chr5:1515534-1566866 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 345 16 1736 127 6 24 214 LPCAT1,MIR6075,SDHAP3
SE_02_044300142 chr5:1515558-1571271 Sample_02_0443 Bone MG63 142 26 1913 146 7 24 438 LPCAT1,MIR6075,SDHAP3
SE_02_044401139 chr5:1515592-1569035 Sample_02_0444 Bone osteosarcoma tumor P10 1139 13 1812 139 7 24 414 LPCAT1,MIR6075,SDHAP3
SE_02_044200250 chr5:1515816-1569553 Sample_02_0442 Bone MG63.3 250 30 1822 140 7 24 438 LPCAT1,MIR6075,SDHAP3
SE_02_150200836 chr5:1516436-1570402 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 836 12 1829 140 7 24 438 LPCAT1,MIR6075,SDHAP3
SE_02_150300957 chr5:1516451-1570411 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 957 7 1829 140 7 24 438 LPCAT1,MIR6075,SDHAP3
SE_02_151300039 chr5:1535813-1569747 Sample_02_1513 Lung Transitional AT2->1 cells 39 11 1212 96 5 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_151400033 chr5:1536167-1570295 Sample_02_1514 Lung Differentiated AT1-like cells 33 12 1226 96 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_001200074 chr5:1536202-1570163 Sample_02_0012 Kidney 786-O_non-targeting 74 9 1219 96 4 0 224 LPCAT1,SDHAP3
SE_02_000800241 chr5:1536316-1569649 Sample_02_0008 Kidney 786-O_empty_vector 241 8 1196 94 4 0 224 LPCAT1,SDHAP3
SE_02_066300161 chr5:1536345-1569504 Sample_02_0663 Thyroid TT 161 9 1193 93 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_153300110 chr5:1536482-1570720 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 110 17 1238 96 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_151200108 chr5:1536483-1569729 Sample_02_1512 Lung Purified AT2 cells 108 16 1189 94 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_149000024 chr5:1537707-1566853 Sample_02_1490 Lung H2087 24 16 1053 79 3 0 0 MIR6075,LPCAT1,SDHAP3
SE_02_142700924 chr5:1539140-1570151 Sample_02_1427 Shoulder fibroblast_343 924 8 1123 95 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_127300177 chr5:1539245-1570460 Sample_02_1273 Cervix HeLa 177 7 1132 95 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_142500618 chr5:1539412-1570241 Sample_02_1425 Shoulder fibroblast_384 618 10 1116 95 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_096100249 chr5:1539647-1566479 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 249 7 982 79 3 0 0 MIR6075,LPCAT1,SDHAP3
SE_02_151000566 chr5:1539909-1571355 Sample_02_1510 Lung H3122_LR_Pano 566 13 1170 99 4 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_128700088 chr5:1544036-1569014 Sample_02_1287 Lung NCI-H510_p8-15 88 5 948 92 4 0 199 MIR6075,LPCAT1,SDHAP3
SE_02_046900176 chr5:1555155-1569498 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 176 3 507 65 2 0 224 MIR6075,LPCAT1,SDHAP3
SE_02_104700665 chr5:1598226-1668343 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 665 21 2278 347 2 0 985 LOC728613,MIR4277,SDHAP3
SE_02_068600369 chr5:1600344-1609823 Sample_02_0686 Lung NCI-H128_no infection 369 7 300 48 0 0 182 LOC728613,SDHAP3
SE_02_129200140 chr5:1600492-1606240 Sample_02_1292 Lung JHU-LX110-SCLC PDX 140 4 172 27 0 0 182 LOC728613,SDHAP3
SE_02_104600640 chr5:1601647-1687812 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 640 26 2782 435 4 0 773 LOC728613,MIR4277,SDHAP3
SE_02_021500315 chr5:1605257-1622798 Sample_02_0215 Skin NHEK_siGRHL3 315 3 627 99 0 0 0 LOC728613,SDHAP3
SE_02_104301281 chr5:1625484-1667174 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1281 10 1336 202 2 0 591 LOC728613,MIR4277,SDHAP3
SE_02_104901971 chr5:1629482-1668011 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1971 10 1262 201 2 0 409 LOC728613,MIR4277,SDHAP3
Genomic distribution of SEs associated with SDHAP3
Genome Browser

The strength of the tissue affected by the gene

Expression of SDHAP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)