SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000252010
Gene: SCARNA5 Gene type: scaRNA
Strand: + External links:
Genomic region: chr2:233275727-233276002 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_025500239 chr2:233184065-233252888 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 239 13 2178 117 5 148 1142 INPP5D,ATG16L1,SCARNA6,SCARNA5
SE_02_133100438 chr2:233209869-233252743 Sample_02_1331 Blood Molm13_CTRL 438 9 1359 87 4 74 164 ATG16L1,SCARNA5,SCARNA6
SE_02_098800818 chr2:233216284-233242338 Sample_02_0988 Blood K562_EPZ 818 9 799 49 2 34 0 SCARNA5,ATG16L1,SCARNA6
SE_02_146700491 chr2:233216329-233231836 Sample_02_1467 Blood HUDEP-2_LRFKO 491 3 421 9 1 31 0 SCARNA5,ATG16L1
SE_02_109900943 chr2:233216508-233242504 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 943 10 802 51 2 34 0 SCARNA5,ATG16L1,SCARNA6
SE_02_001600221 chr2:233217199-233252577 Sample_02_0016 Blood erythroblasts 221 6 1086 82 3 69 164 ATG16L1,SCARNA6,SCARNA5
SE_02_101800315 chr2:233217214-233242145 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 315 6 767 49 2 34 0 SCARNA5,ATG16L1,SCARNA6
SE_02_033600517 chr2:233217491-233253670 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 517 7 1123 87 6 69 164 ATG16L1,SCARNA6,SCARNA5
SE_02_084100673 chr2:233218147-233252851 Sample_02_0841 Blood THP-1_untr 673 10 1064 83 4 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_099400271 chr2:233218197-233251489 Sample_02_0994 Blood MOLM13_SIK3TQ 271 16 1024 77 3 54 10 SCARNA5,ATG16L1,SCARNA6
SE_02_057400466 chr2:233218247-233251494 Sample_02_0574 Blood MOLM-13_sgNeg2 466 11 1022 77 3 54 12 SCARNA5,ATG16L1,SCARNA6
SE_02_025600831 chr2:233220242-233253145 Sample_02_0256 Peripheral blood MV411 831 11 1039 83 6 69 164 ATG16L1,SCARNA6,SCARNA5
SE_02_099300279 chr2:233220851-233250316 Sample_02_0993 Blood MOLM-13_empty 279 13 941 73 3 54 0 SCARNA5,ATG16L1,SCARNA6
SE_02_014400652 chr2:233221134-233253142 Sample_02_0144 Peripheral blood MV411_DMSO 652 6 1012 83 6 69 164 ATG16L1,SCARNA6,SCARNA5
SE_02_058100337 chr2:233221254-233253612 Sample_02_0581 Blood MOLM13_empty_HG 337 10 1029 84 6 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_134500556 chr2:233221323-233254358 Sample_02_1345 Leukophereses leukophereses_p358 556 16 1060 84 6 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_099500247 chr2:233221332-233251473 Sample_02_0995 Blood MOLM-13_empty vector 247 17 955 75 3 54 7 SCARNA5,ATG16L1,SCARNA6
SE_02_057500271 chr2:233221334-233253144 Sample_02_0575 Blood MOLM13_sgLKB1e2 271 12 1008 83 6 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_057700335 chr2:233221348-233253339 Sample_02_0577 Blood MOLM13_empty 335 11 1014 83 6 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_058200500 chr2:233221354-233250549 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 500 10 929 73 3 54 0 SCARNA5,ATG16L1,SCARNA6
SE_02_057800269 chr2:233221359-233253287 Sample_02_0578 Blood MOLM-13_sgSIK3e4 269 16 1012 83 6 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_109800204 chr2:233221388-233252874 Sample_02_1098 Blood THP1_DMSO_noPMA 204 13 995 81 4 69 164 ATG16L1,SCARNA5,SCARNA6
SE_02_062200626 chr2:233221573-233251357 Sample_02_0622 Blood EOL1_Naive 626 10 949 75 3 54 0 SCARNA5,ATG16L1,SCARNA6
SE_02_045500128 chr2:233226705-233273767 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 128 20 1461 134 10 100 529 ATG16L1,SCARNA5,SAG,SCARNA6
SE_02_013200902 chr2:233229384-233271067 Sample_02_0132 Lung 1015_CL 902 8 1321 123 8 65 442 ATG16L1,SAG,SCARNA6,SCARNA5
SE_00_004400405 chr2:233230425-233273386 Sample_00_0044 Cord blood T-cell 405 9 1358 130 9 73 493 ATG16L1,SAG,SCARNA6,SCARNA5
SE_02_023300672 chr2:233230649-233273910 Sample_02_0233 Tonsil Th1 672 7 1363 131 9 76 538 ATG16L1,SAG,SCARNA6,SCARNA5
SE_02_088601321 chr2:233233884-233255391 Sample_02_0886 Skin foreskin_ p63KLF4 1321 7 674 79 5 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_088401099 chr2:233234754-233254102 Sample_02_0884 Colon LoVo 1099 4 608 71 5 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_104200261 chr2:233234820-233273212 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 261 18 1156 122 8 70 485 ATG16L1,SCARNA5,SAG,SCARNA6
SE_02_127600357 chr2:233238433-233254110 Sample_02_1276 Prostate PC3_GSK126 357 7 486 55 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_136500547 chr2:233239609-233254165 Sample_02_1365 Pancreas AsPC1-untreated 547 6 448 50 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_070500420 chr2:233239624-233253611 Sample_02_0705 Pancreas AsPC1 WT 420 4 426 50 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_070600080 chr2:233239626-233253883 Sample_02_0706 Pancreas SUIT2 WT 80 8 439 50 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_137000444 chr2:233239630-233253581 Sample_02_1370 Pancreas Patu8902-untreated 444 9 426 50 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_071400378 chr2:233239861-233249604 Sample_02_0714 Pancreas SUIT2_MTV 378 7 296 36 0 19 0 SCARNA5,ATG16L1,SCARNA6
SE_02_071600241 chr2:233240123-233254917 Sample_02_0716 Pancreas SUIT2_GFP 241 9 459 46 4 35 164 ATG16L1,SCARNA5,SCARNA6
SE_02_103602197 chr2:233241174-233271668 Sample_02_1036 Mammary gland HCC70_XY018 2197 9 908 83 6 67 442 ATG16L1,SCARNA5,SAG,SCARNA6
SE_02_076601039 chr2:233244354-233268224 Sample_02_0766 Ovary PEO1 1039 17 707 74 6 52 402 ATG16L1,SCARNA5,SAG,SCARNA6
SE_02_002600416 chr2:233247188-233272355 Sample_02_0026 Blood CD4donorE 416 7 729 71 7 59 442 ATG16L1,SAG,SCARNA6,SCARNA5
SE_02_139200615 chr2:233250929-233274548 Sample_02_1392 Peripheral blood Mac-2A_ALK- 615 11 698 64 7 59 546 ATG16L1,SCARNA5,SAG,SCARNA6
SE_02_108300252 chr2:233298673-233370029 Sample_02_1083 Macula macula 252 34 2086 179 19 163 1604 DGKD,SAG,ATG16L1,SCARNA6,SCARNA5
SE_02_108200571 chr2:233299499-233315527 Sample_02_1082 Retina retina 571 7 464 17 3 18 189 SAG,SCARNA5,DGKD,ATG16L1,SCARNA6,GIGYF2
SE_02_017600366 chr2:233312023-233360863 Sample_02_0176 Peripheral blood LOUCY 366 6 1431 142 14 146 1415 SAG,DGKD,SCARNA6,SCARNA5
SE_02_125100068 chr2:233312347-233388696 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 68 27 2242 202 29 167 1501 DGKD,SAG,SCARNA5,SCARNA6
SE_02_057300058 chr2:233312547-233365277 Sample_02_0573 Blood Nalm6_1 58 17 1545 155 16 146 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_104601271 chr2:233312697-233357318 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1271 17 1292 129 14 145 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_078300186 chr2:233312721-233393970 Sample_02_0783 Blood MEC2 186 20 2374 205 30 176 1549 DGKD,SAG,SCARNA5,SCARNA6
SE_02_148000133 chr2:233312768-233397490 Sample_02_1480 Bone MHH-ES-1 133 17 2450 213 30 176 1549 DGKD,SAG,SCARNA5,SCARNA6
SE_02_104300078 chr2:233313066-233457564 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 78 99 4260 311 58 292 3141 DGKD,SAG,SCARNA5,SCARNA6
SE_02_104800658 chr2:233313075-233357309 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 658 9 1278 128 14 145 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_125200084 chr2:233313113-233387097 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 84 29 2165 196 27 152 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_125000076 chr2:233313120-233386512 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 76 16 2150 196 27 152 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_133000346 chr2:233314205-233357249 Sample_02_1330 Blood AMU-AML1 346 16 1238 126 13 145 1415 DGKD,SAG,SCARNA5,SCARNA6
SE_02_143200098 chr2:233314321-233487103 Sample_02_1432 Bone A673 STAG2 WT 98 88 5367 399 67 353 5032 DGKD,USP40,SAG,SCARNA5,SCARNA6
SE_02_143300163 chr2:233314321-233488956 Sample_02_1433 Bone A673 STAG2 null 163 70 5437 403 68 355 5063 DGKD,USP40,SAG,SCARNA5,SCARNA6
SE_02_070100297 chr2:233315073-233335333 Sample_02_0701 Bone David_TC32 297 15 649 73 2 63 869 SAG,SCARNA5,DGKD,SCARNA6
SE_02_147500311 chr2:233316511-233385596 Sample_02_1475 Bone CHLA-25 311 22 2010 187 25 139 1360 DGKD,SAG,SCARNA5,SCARNA6
SE_02_147800144 chr2:233316876-233385516 Sample_02_1478 Bone EW-3 144 13 1997 187 25 139 1360 DGKD,SAG,SCARNA5,SCARNA6
SE_02_104900059 chr2:233319555-233480627 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 59 115 4970 369 65 330 4680 DGKD,USP40,SAG,SCARNA5,SCARNA6
SE_02_105900139 chr2:233321291-233448475 Sample_02_1059 Bone A673_WT 139 34 3684 278 52 223 2106 DGKD,SAG,SCARNA5,SCARNA6
SE_02_147300141 chr2:233321291-233448475 Sample_02_1473 Bone A-673 141 33 3684 278 52 223 2106 DGKD,SAG,SCARNA5,SCARNA6
SE_02_038700141 chr2:233322386-233360115 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 141 17 1064 116 13 110 999 SAG,DGKD,SCARNA6,SCARNA5
SE_02_152900735 chr2:233323876-233370542 Sample_02_1529 Peripheral blood neutrophils_0BC75 735 13 1342 137 16 105 957 DGKD,SAG,SCARNA5,SCARNA6
SE_02_012200321 chr2:233325149-233364669 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 321 5 1124 121 14 104 957 SAG,DGKD,SCARNA6,SCARNA5
SE_02_124900073 chr2:233325461-233396652 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 73 31 2041 179 28 134 1091 DGKD,SAG,SCARNA5,SCARNA6
Genomic distribution of SEs associated with SCARNA5
Genome Browser

The strength of the tissue affected by the gene

Expression of SCARNA5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)