SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000116521
Gene: SCAMP3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:155255979-155262430 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_142700261 chr1:155205648-155213180 Sample_02_1427 Shoulder fibroblast_343 261 1 191 9 3 80 914 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_02_025200257 chr1:155205695-155215825 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 257 1 262 11 3 80 1415 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_152900652 chr1:155205974-155215834 Sample_02_1529 Peripheral blood neutrophils_0BC75 652 1 257 11 3 79 1418 THBS3,MTX1,GBAP1,KRTCAP2,TRIM46,GBA,MUC1,SCAMP3,MIR92B,FAM189B
SE_02_142800474 chr1:155206138-155212870 Sample_02_1428 Shoulder fibroblast_316 474 1 177 7 2 77 824 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_02_142600163 chr1:155206263-155212994 Sample_02_1426 Shoulder fibroblast_341 163 1 177 7 2 71 833 THBS3,MTX1,KRTCAP2,TRIM46,GBA,MUC1,GBAP1,SCAMP3,MIR92B,FAM189B
SE_00_002500255 chr1:155206469-155214708 Sample_00_0025 Muscle of leg muscle-of-leg 255 1 194 8 2 66 1113 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_153000585 chr1:155206483-155216685 Sample_02_1530 Peripheral blood neutrophils_0BA0X 585 1 252 9 2 66 1436 THBS3,MTX1,GBAP1,KRTCAP2,TRIM46,GBA,MUC1,SCAMP3,MIR92B,FAM189B
SE_01_005200552 chr1:155206550-155221432 Sample_01_0052 Blood neutrophil 552 1 377 13 3 66 1859 MTX1,THBS3,GBAP1,GBA,SCAMP3,MIR92B,KRTCAP2,FAM189B,TRIM46,MUC1
SE_02_103501580 chr1:155210726-155253243 Sample_02_1035 Mammary gland HCC70_Vehicle 1580 11 1051 76 6 68 3569 MTX1,GBA,GBAP1,FAM189B,KRTCAP2,TRIM46,HCN3,MUC1,SCAMP3,MIR92B,PKLR,CLK2,THBS3
SE_02_021600298 chr1:155211582-155248287 Sample_02_0216 Skin NHEK_scramble 298 12 917 60 6 22 2937 MTX1,GBA,GBAP1,FAM189B,CLK2,SCAMP3,MIR92B,KRTCAP2,TRIM46,MUC1,THBS3,HCN3
SE_02_016700733 chr1:155218225-155245620 Sample_02_0167 Mammary gland HCC1954_LCC2 733 4 690 48 3 0 1550 GBA,GBAP1,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_001100656 chr1:155218986-155228515 Sample_02_0011 Kidney A-498_wtVHL 656 5 233 14 2 0 167 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_026400389 chr1:155222400-155229064 Sample_02_0264 Skeletal muscle 7250-empty 389 1 146 15 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_008500279 chr1:155222958-155228743 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 279 1 130 13 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_026500466 chr1:155223148-155228994 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 466 1 130 14 2 0 141 GBAP1,GBA,CLK2,SCAMP3,MIR92B,KRTCAP2,MTX1,FAM189B,TRIM46,MUC1,THBS3,HCN3
SE_02_077500724 chr1:155280425-155316816 Sample_02_0775 Pancreas EndoC-BH1_SE 724 10 907 67 3 250 2743 FDPS,PKLR,HCN3,RUSC1,RUSC1-AS1,GBA,SCAMP3,CLK2,MIR555,FAM189B
SE_04_000100738 chr1:155298311-155311566 Sample_04_0001 Blood heat shocked K562 738 2 309 22 2 47 571 FDPS,PKLR,RUSC1,HCN3,RUSC1-AS1,SCAMP3,CLK2,FAM189B,MIR555
SE_02_043100497 chr1:155299038-155311897 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 497 1 287 19 2 47 571 FDPS,PKLR,CLK2,C1ORF104,SCAMP3,RUSC1,MIR555,FAM189B,HCN3
SE_02_028600741 chr1:155304321-155311131 Sample_02_0286 Liver HuH7_IL-1alpha_1h 741 2 158 9 1 22 297 FDPS,CLK2,C1ORF104,SCAMP3,RUSC1,PKLR,MIR555,FAM189B,HCN3
SE_02_082700997 chr1:155305607-155311894 Sample_02_0827 Stomach normal gastric 997 2 139 7 1 21 297 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_141700309 chr1:155306302-155310705 Sample_02_1417 Brain SF7761 309 1 108 5 1 21 297 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_148000956 chr1:155307546-155312698 Sample_02_1480 Bone MHH-ES-1 956 2 107 3 1 25 396 FDPS,RUSC1,HCN3,RUSC1-AS1,SCAMP3,PKLR,CLK2,MIR555
SE_02_104900903 chr1:155311030-155340480 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 903 15 697 34 1 220 2910 ASH1L,FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_085400604 chr1:155311188-155325672 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 604 3 339 20 1 148 1924 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_108200926 chr1:155311207-155325042 Sample_02_1082 Retina retina 926 3 332 20 1 138 1762 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
SE_02_050500822 chr1:155311466-155326945 Sample_02_0505 Esophagus KYSE70_1 822 2 360 21 1 156 2141 FDPS,RUSC1,RUSC1-AS1,HCN3,SCAMP3,PKLR,CLK2,MIR555
Genomic distribution of SEs associated with SCAMP3
Genome Browser

The strength of the tissue affected by the gene

Expression of SCAMP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)