SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000133318
Gene: RTN3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:63681446-63759891 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_125800077 chr11:63552385-63635067 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 77 25 2053 131 2 65 1378 HRASLS2,ATL3,PLA2G16,RARRES3,LGALS12,RTN3
SE_02_080800258 chr11:63567319-63636782 Sample_02_0808 Ovary RMG1_ARID1A KO 258 50 1704 110 1 80 1130 ATL3,PLA2G16,RARRES3,HRASLS2,RTN3
SE_02_048100730 chr11:63597718-63641560 Sample_02_0481 Mammary gland MDA-MB231 730 14 1011 74 0 67 895 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_104301920 chr11:63598018-63639628 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1920 9 957 69 0 67 862 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_136100889 chr11:63603123-63635993 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 889 5 757 57 0 46 742 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_136700331 chr11:63603469-63645280 Sample_02_1367 Pancreas Capan1-untreated 331 12 972 70 0 83 877 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_008600400 chr11:63606130-63636571 Sample_02_0086 Pancreas CAPAN1 400 3 713 53 0 55 805 PLA2G16,ATL3,RTN3,HRASLS2
SE_02_137100899 chr11:63607750-63635962 Sample_02_1371 Pancreas Patu899S-untreated 899 7 662 49 0 46 742 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_020500122 chr11:63607826-63633984 Sample_02_0205 Stomach Gastric_Primary_Sample_T 122 6 612 48 0 30 716 PLA2G16,ATL3,RTN3,HRASLS2
SE_02_105500270 chr11:63608588-63632589 Sample_02_1055 Esophagus KYAE1 270 4 559 45 0 29 677 ATL3,PLA2G16,HRASLS2,RTN3
SE_02_103500264 chr11:63617631-63738654 Sample_02_1035 Mammary gland HCC70_Vehicle 264 54 2913 170 0 268 1512 ATL3,RTN3,C11ORF95,PLA2G16
SE_02_104901028 chr11:63628510-63703841 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1028 26 1896 115 0 180 947 ATL3,RTN3,PLA2G16
SE_02_076800192 chr11:63630995-63738819 Sample_02_0768 Ovary SKOV3 192 40 2620 153 0 255 1105 ATL3,RTN3,C11ORF95,PLA2G16
SE_02_045100861 chr11:63648031-63670896 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 861 3 552 41 0 29 149 ATL3,PLA2G16,RTN3
SE_02_104300930 chr11:63652918-63762139 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 930 26 2665 141 0 244 1520 RTN3,ATL3,C11ORF95,PLA2G16
SE_02_077000978 chr11:63653013-63709504 Sample_02_0770 Ovary OVCA429_shLuc 978 15 1425 78 0 118 546 ATL3,RTN3,PLA2G16
SE_02_076900621 chr11:63657417-63690032 Sample_02_0769 Ovary HEYA8 621 15 831 42 0 101 505 ATL3,RTN3,PLA2G16
SE_02_009700865 chr11:63658400-63673806 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 865 4 390 23 0 43 332 ATL3,RTN3,PLA2G16
SE_02_077100872 chr11:63661437-63683814 Sample_02_0771 Ovary OVCA429_shGRHL2 872 12 583 31 0 89 416 ATL3,RTN3,PLA2G16
SE_02_143200510 chr11:63661552-63738465 Sample_02_1432 Bone A673 STAG2 WT 510 18 1891 103 0 169 660 ATL3,RTN3,C11ORF95,PLA2G16
SE_02_078000658 chr11:63661613-63691578 Sample_02_0780 Liver SMMC-7721 658 11 775 40 0 93 416 ATL3,RTN3,PLA2G16
SE_02_046600964 chr11:63662531-63690145 Sample_02_0466 Adipose visceral adipocytes 964 18 720 39 0 92 416 ATL3,RTN3,PLA2G16
SE_02_127901506 chr11:63662558-63689970 Sample_02_1279 Bone Mesenchymal stem cells 1506 6 710 39 0 92 416 ATL3,RTN3,PLA2G16
SE_02_142800722 chr11:63662562-63691217 Sample_02_1428 Shoulder fibroblast_316 722 12 742 40 0 93 416 ATL3,RTN3,PLA2G16
SE_02_081100775 chr11:63662572-63672104 Sample_02_0811 Thyroid BCPAP 775 3 252 20 0 31 226 ATL3,PLA2G16,RTN3
SE_02_048101800 chr11:63662589-63684173 Sample_02_0481 Mammary gland MDA-MB231 1800 6 563 31 0 91 416 ATL3,RTN3,PLA2G16
SE_02_142700840 chr11:63662682-63691110 Sample_02_1427 Shoulder fibroblast_343 840 13 739 40 0 93 416 ATL3,RTN3,PLA2G16
SE_02_049901431 chr11:63662783-63689142 Sample_02_0499 Fetal lung IMR90 IR Senescence 1431 8 686 38 0 92 416 ATL3,RTN3,PLA2G16
SE_02_088601873 chr11:63662812-63684598 Sample_02_0886 Skin foreskin_ p63KLF4 1873 6 568 31 0 91 416 ATL3,RTN3,PLA2G16
SE_02_142600963 chr11:63662826-63683726 Sample_02_1426 Shoulder fibroblast_341 963 7 548 31 0 89 416 ATL3,RTN3,PLA2G16
SE_02_067201035 chr11:63662832-63683723 Sample_02_0672 Endometrium endometrium cancer_DSG 1035 5 548 31 0 89 416 ATL3,RTN3,PLA2G16
SE_02_060501301 chr11:63663202-63683560 Sample_02_0605 Skin Skin Fibroblast_DMSO 1301 6 535 31 0 89 416 ATL3,RTN3,PLA2G16
SE_02_135400993 chr11:63663211-63672044 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 993 2 231 20 0 31 215 ATL3,PLA2G16,RTN3
SE_02_135201018 chr11:63663379-63671666 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 1018 3 217 17 0 26 139 ATL3,PLA2G16,RTN3
SE_02_158400919 chr11:63663412-63690114 Sample_02_1584 Brain U87 GBM_Mock 919 5 696 37 0 92 416 ATL3,RTN3,PLA2G16
SE_02_053000990 chr11:63663527-63690015 Sample_02_0530 Mammary gland MCF10A 990 7 691 37 0 92 416 ATL3,RTN3,PLA2G16
SE_02_064200251 chr11:63663647-63690703 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 251 13 708 37 0 93 416 ATL3,RTN3,PLA2G16
SE_02_027400942 chr11:63663649-63672304 Sample_02_0274 Endometriosis hTERT_KD 942 2 232 17 0 31 243 ATL3,RTN3,PLA2G16
SE_02_050500828 chr11:63663693-63691818 Sample_02_0505 Esophagus KYSE70_1 828 5 733 38 0 93 416 ATL3,RTN3,PLA2G16
SE_02_050400446 chr11:63663716-63705771 Sample_02_0504 Esophagus KYSE510_1 446 15 1106 60 0 105 457 ATL3,RTN3,PLA2G16
SE_02_057200922 chr11:63663862-63671680 Sample_02_0572 Brain LN229_1_mM_glucose 922 5 210 16 0 27 141 ATL3,PLA2G16,RTN3
SE_02_039602110 chr11:63663931-63672397 Sample_02_0396 Skin NHEK-D 2110 3 230 17 0 31 243 ATL3,RTN3,PLA2G16
SE_02_099100899 chr11:63664011-63672384 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 899 4 230 17 0 31 243 ATL3,PLA2G16,RTN3
SE_02_064300168 chr11:63664124-63690835 Sample_02_0643 Mammary gland MDA-MB-436 168 11 703 37 0 93 416 ATL3,RTN3,PLA2G16
SE_02_046500468 chr11:63664185-63690252 Sample_02_0465 Adipose subcutaneous adipocytes 468 19 691 36 0 92 416 ATL3,RTN3,PLA2G16
SE_02_050600451 chr11:63665396-63695769 Sample_02_0506 Esophagus TE5_1 451 12 795 34 0 93 416 ATL3,RTN3
SE_02_051700445 chr11:63665433-63695769 Sample_02_0517 Esophagus TE5 445 12 795 34 0 93 416 ATL3,RTN3
SE_01_010701053 chr11:63666142-63700777 Sample_01_0107 Esophagus esophagus squamous epithelium 1053 5 901 51 0 92 416 ATL3,RTN3
SE_02_142500693 chr11:63666399-63672425 Sample_02_1425 Shoulder fibroblast_384 693 3 166 11 0 30 243 ATL3,RTN3
SE_02_061500610 chr11:63666518-63691874 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 610 6 662 32 0 92 416 ATL3,RTN3
SE_02_108300928 chr11:63666894-63700606 Sample_02_1083 Macula macula 928 8 878 49 0 90 416 ATL3,RTN3
SE_02_135300919 chr11:63667210-63672155 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 919 2 138 9 0 28 234 ATL3,RTN3
SE_02_143300540 chr11:63667386-63724400 Sample_02_1433 Bone A673 STAG2 null 540 17 1415 73 0 166 660 ATL3,RTN3,C11ORF95
SE_02_128000922 chr11:63667442-63711175 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 922 7 1121 58 0 118 457 ATL3,RTN3
SE_02_094801059 chr11:63667683-63683549 Sample_02_0948 Pharyng Detroit562 1059 3 428 20 0 86 416 ATL3,RTN3
SE_02_141001555 chr11:63667811-63690949 Sample_02_1410 Brain GSC6 1555 7 609 29 0 90 416 ATL3,RTN3
SE_02_148000794 chr11:63669167-63687307 Sample_02_1480 Bone MHH-ES-1 794 4 493 24 0 81 416 ATL3,RTN3
SE_02_108600869 chr11:63669478-63683517 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 869 2 390 20 0 79 416 ATL3,RTN3
SE_02_085701313 chr11:63669487-63684488 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1313 2 410 20 0 81 416 ATL3,RTN3
SE_02_148100395 chr11:63669487-63691422 Sample_02_1481 Bone MIC 395 7 585 29 0 83 416 ATL3,RTN3
SE_02_068500818 chr11:63669546-63672293 Sample_02_0685 Lung NCI-H1048_no infection 818 1 87 9 0 21 243 ATL3,RTN3
SE_02_146001269 chr11:63669589-63690585 Sample_02_1460 Blood Mutz-3 1269 6 559 28 0 83 416 ATL3,RTN3
SE_02_103300480 chr11:63669944-63691937 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 480 3 581 29 0 83 416 ATL3,RTN3,HRASLS2,C11orf84
SE_02_147500732 chr11:63679551-63699855 Sample_02_1475 Bone CHLA-25 732 2 516 29 0 58 173 RTN3,ATL3
SE_02_106100664 chr11:63680619-63691261 Sample_02_1061 Bone TC71_WT 664 1 269 12 0 56 173 RTN3,ATL3
SE_02_148800674 chr11:63680619-63691261 Sample_02_1488 Bone TC-71 674 1 269 12 0 56 173 RTN3,ATL3
SE_02_055500544 chr11:63680892-63726783 Sample_02_0555 Other HAP1_WT 544 10 1118 60 0 128 417 RTN3,ATL3,C11ORF95
SE_02_148200823 chr11:63681411-63691838 Sample_02_1482 Bone POE 823 4 267 13 0 46 137 RTN3,ATL3
SE_02_122300724 chr11:63681506-63700550 Sample_02_1223 Bone marrow KMS28BM 724 7 488 31 0 45 122 RTN3,ATL3
SE_02_148300814 chr11:63681509-63710915 Sample_02_1483 Bone RD-ES 814 6 740 41 0 73 162 RTN3,ATL3
SE_02_106000693 chr11:63681556-63691195 Sample_02_1060 Bone TC71_SA2 KO 693 2 245 11 0 45 116 RTN3,ATL3
SE_02_077501275 chr11:63702704-63774694 Sample_02_0775 Pancreas EndoC-BH1_SE 1275 15 1659 91 0 318 2376 RTN3,C11ORF95,ATL3,C11ORF84
Genomic distribution of SEs associated with RTN3
Genome Browser

The strength of the tissue affected by the gene

Expression of RTN3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)