SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000007376
Gene: RPUSD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:784974-788397 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_078100428 chr16:727097-742488 Sample_02_0781 Lymphoma Pfeiffer_DMSO 428 1 594 64 1 98 2297 HAGHL,NARFL,MSLN,FBXL16,METRN,STUB1,FAM173A,MIR662,WDR24,CCDC78,JMJD8,CHTF18,RPUSD1
SE_02_075800479 chr16:730285-741435 Sample_02_0758 Peripheral blood REH 479 4 425 48 0 55 1431 NARFL,MSLN,FBXL16,METRN,FAM173A,MIR662,HAGHL,WDR24,CCDC78,JMJD8,CHTF18,RPUSD1
SE_02_073900389 chr16:732892-742133 Sample_02_0739 Blood Nalm6 389 1 341 39 0 29 923 NARFL,MSLN,FBXL16,METRN,FAM173A,MIR662,HAGHL,WDR24,CCDC78,JMJD8,CHTF18,RPUSD1
SE_02_155500319 chr16:733486-754538 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 319 12 829 55 2 22 839 NARFL,MSLN,FBXL16,RPUSD1,METRN,FAM173A,MIR662,HAGHL,WDR24,CCDC78,JMJD8,CHTF18,GNG13
SE_02_076500546 chr16:734420-743318 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 546 1 336 35 1 14 603 NARFL,MSLN,FBXL16,METRN,FAM173A,MIR662,HAGHL,WDR24,CCDC78,JMJD8,CHTF18,RPUSD1
SE_02_088500740 chr16:734771-741578 Sample_02_0885 Blood NALM6_2 740 1 255 26 0 11 536 NARFL,MSLN,FBXL16,METRN,FAM173A,MIR662,HAGHL,WDR24,CCDC78,CHTF18,RPUSD1
SE_02_036200461 chr16:735328-741825 Sample_02_0362 Haematopoietic and lymphoid tissue REH 461 1 222 22 0 11 473 NARFL,MSLN,WDR24,HAGHL,METRN,FAM173A,MIR662,FBXL16,CCDC78,CHTF18,MSLNL,RPUSD1
SE_02_012400578 chr16:737030-761565 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 578 3 999 57 2 18 606 MSLN,NARFL,WDR24,HAGHL,PRR25,METRN,FAM173A,MIR662,FBXL16,CCDC78,GNG13,MSLNL,CHTF18,RPUSD1
SE_02_136500266 chr16:745570-764124 Sample_02_1365 Pancreas AsPC1-untreated 266 6 777 36 1 14 643 MSLN,FBXL16,PRR25,METRN,FAM173A,MIR662,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_138400431 chr16:751749-783991 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 431 9 1646 98 0 101 1928 MSLN,MIR662,FBXL16,PRR25,METRN,FAM173A,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_102700563 chr16:756939-763609 Sample_02_1027 Esophagus KYSE180_1 563 3 317 16 0 10 493 MSLN,PRR25,METRN,FAM173A,MIR662,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_087200465 chr16:758699-781811 Sample_02_0872 Colon HCT116_siCtrl-5FU 465 4 1238 78 0 91 1928 MSLN,MIR662,PRR25,METRN,FAM173A,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_078000221 chr16:758813-767396 Sample_02_0780 Liver SMMC-7721 221 1 465 26 0 22 1451 MSLN,PRR25,METRN,FAM173A,MIR662,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_039601336 chr16:758970-766434 Sample_02_0396 Skin NHEK-D 1336 1 375 22 0 18 1186 MSLN,HAGHL,PRR25,METRN,FAM173A,MIR662,NARFL,CCDC78,GNG13,MSLNL,CHTF18,RPUSD1
SE_02_114800382 chr16:759174-778874 Sample_02_1148 Kidney WT 9-12_control_vehicle 382 4 1044 68 0 88 1928 MSLN,MIR662,PRR25,METRN,FAM173A,HAGHL,CCDC78,RPUSD1,CHTF18,NARFL,GNG13
SE_02_087300447 chr16:791328-807744 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 447 4 993 55 1 76 2124 CHTF18,GNG13,PRR25,MSLN,MIR662,RPUSD1
SE_02_021600806 chr16:794772-818015 Sample_02_0216 Skin NHEK_scramble 806 4 1186 84 1 50 1748 CHTF18,GNG13,PRR25,MSLN,MIR662,MSLNL,RPUSD1
SE_02_021500174 chr16:798369-815781 Sample_02_0215 Skin NHEK_siGRHL3 174 3 787 65 0 25 996 GNG13,PRR25,MSLN,MIR662,CHTF18,MSLNL,RPUSD1
SE_02_003400339 chr16:799776-820240 Sample_02_0034 Peripheral blood CUTLL1_GSI 339 3 931 68 0 10 758 GNG13,PRR25,MSLN,MIR662,CHTF18,MSLNL,RPUSD1
SE_02_096200147 chr16:806599-868723 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 147 11 2906 133 6 32 1121 LMF1,PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_097100059 chr16:806682-914816 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 59 25 5070 296 6 116 2112 LMF1,PRR25,MSLN,CHTF18,MIR662,LMF1-AS1,GNG13,RPUSD1
SE_02_036300537 chr16:806813-832289 Sample_02_0363 Haematopoietic and lymphoid tissue 697 537 4 1195 69 1 3 414 PRR25,MSLN,MIR662,CHTF18,GNG13,MSLNL,RPUSD1
SE_02_103501349 chr16:806868-807958 Sample_02_1035 Mammary gland HCC70_Vehicle 1349 1 45 5 0 0 162 PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_103601069 chr16:806897-807914 Sample_02_1036 Mammary gland HCC70_XY018 1069 1 43 5 0 0 162 PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_107800037 chr16:807009-874947 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 37 20 3278 144 6 61 1666 LMF1,PRR25,MSLN,CHTF18,MIR662,LMF1-AS1,GNG13,RPUSD1
SE_02_118800135 chr16:807038-873755 Sample_02_1188 Brain GBM18 135 13 3208 143 6 58 1666 LMF1,PRR25,MSLN,CHTF18,MIR662,LMF1-AS1,GNG13,RPUSD1
SE_02_118400498 chr16:807061-869968 Sample_02_1184 Brain GBM13 498 20 2966 133 6 38 1333 LMF1,PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_117600545 chr16:807080-869977 Sample_02_1176 Brain GBM04 545 12 2966 133 6 39 1333 LMF1,PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_095800314 chr16:807088-867935 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 314 9 2872 131 6 32 1121 LMF1,PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_121200097 chr16:807100-869952 Sample_02_1212 Brain GBM30 97 11 2964 133 6 38 1328 LMF1,PRR25,MSLN,CHTF18,MIR662,GNG13,RPUSD1
SE_02_119000034 chr16:807107-876044 Sample_02_1190 Brain GBM24 34 19 3319 145 6 61 1666 LMF1,PRR25,MSLN,CHTF18,MIR662,LMF1-AS1,GNG13,RPUSD1
SE_02_000400036 chr16:816152-934177 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 36 30 5559 393 7 135 1847 LMF1,PRR25,MIR662,RPUSD1,CHTF18,MSLNL,GNG13,SOX8
SE_02_021600842 chr16:833717-855240 Sample_02_0216 Skin NHEK_scramble 842 4 1099 41 3 25 442 LMF1,CHTF18,PRR25,GNG13,RPUSD1
Genomic distribution of SEs associated with RPUSD1
Genome Browser

The strength of the tissue affected by the gene

Expression of RPUSD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)