SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000233927
Gene: RPS28 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:8321158-8323340 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602435 chr19:8238528-8280829 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2435 11 1286 103 3 0 1087 CERS4,CD320,NDUFA7,RPS28
SE_02_012800191 chr19:8257774-8317856 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 191 23 1327 146 2 47 1358 LASS4,NDUFA7,CD320,ANGPTL4,KANK3,RPS28
SE_02_012200451 chr19:8266885-8308938 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 451 8 721 85 0 35 791 CD320,NDUFA7,KANK3,RPS28
SE_02_075001097 chr19:8267525-8283793 Sample_02_0750 Lymphoma Rec-1_GSI 1097 5 246 30 0 0 0 CD320,NDUFA7,RPS28
SE_02_103602254 chr19:8295347-8318934 Sample_02_1036 Mammary gland HCC70_XY018 2254 10 647 89 0 47 1002 CD320,NDUFA7,ANGPTL4,KANK3,RPS28
SE_02_012400333 chr19:8303612-8319154 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 333 1 532 69 0 39 705 NDUFA7,CD320,ANGPTL4,KANK3,RPS28
SE_02_088800932 chr19:8332614-8374097 Sample_02_0888 Heart left ventricle_LV1160 932 13 1197 148 3 157 1766 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_090601244 chr19:8333193-8368016 Sample_02_0906 Heart left ventricle_DCM_LV1072 1244 10 991 130 2 136 1253 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_01_009000757 chr19:8334210-8369092 Sample_01_0090 Lung upper-lobe-of-left-lung 757 5 1000 127 3 133 1037 ANGPTL4,KANK3,CD320,RAB11B,NDUFA7,MARCH2,RPS28
SE_02_103602272 chr19:8334486-8335924 Sample_02_1036 Mammary gland HCC70_XY018 2272 1 36 7 0 51 366 KANK3,CD320,NDUFA7,ANGPTL4,RPS28
SE_02_130901169 chr19:8334807-8367920 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1169 7 957 121 2 120 884 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_146900725 chr19:8335384-8368619 Sample_02_1469 Umbilical Vein HUVEC 725 7 962 120 3 93 731 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_083200743 chr19:8335479-8367900 Sample_02_0832 Umblical vein HUVECs_TNF30min 743 11 939 118 2 87 713 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_128000616 chr19:8335751-8368946 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 616 7 964 121 3 80 634 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_058501005 chr19:8336844-8368105 Sample_02_0585 Umbilical vein HUVEC 0hour 1005 9 912 109 2 78 584 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_156900897 chr19:8340114-8371560 Sample_02_1569 Endothelial Endothelial cells 897 7 927 91 3 88 759 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_130800736 chr19:8340339-8367931 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 736 7 797 77 2 76 510 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_148000512 chr19:8342036-8368773 Sample_02_1480 Bone MHH-ES-1 512 7 783 75 3 70 510 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_148200791 chr19:8345186-8374237 Sample_02_1482 Bone POE 791 11 845 74 3 62 817 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_01_008801098 chr19:8347710-8375473 Sample_01_0088 Tibial nerve tibial-nerve 1098 4 831 68 3 64 889 ANGPTL4,CD320,RAB11B,NDUFA7,MARCH2,KANK3,RPS28
SE_02_046500600 chr19:8348041-8375756 Sample_02_0465 Adipose subcutaneous adipocytes 600 13 825 69 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_03_000900488 chr19:8351832-8397981 Sample_03_0009 Lung A549_dexamethasone_3h 488 6 1412 130 3 122 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_099100678 chr19:8351881-8368200 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 678 5 451 36 2 46 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_03_000400476 chr19:8351932-8397992 Sample_03_0004 Lung A549_dexamethasone_4h 476 6 1407 130 3 122 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_076201107 chr19:8351939-8371336 Sample_02_0762 Podocyte podocyte_CTL 1107 3 550 47 3 54 586 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_03_001500584 chr19:8351990-8397651 Sample_03_0015 Lung A549_dexamethasone_8h 584 7 1396 128 3 122 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_03_000800580 chr19:8352006-8398036 Sample_03_0008 Lung A549_dexamethasone_7h 580 4 1407 130 3 122 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_03_001000525 chr19:8352048-8397874 Sample_03_0010 Lung A549_dexamethasone_1h 525 7 1399 129 3 122 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_116900745 chr19:8352145-8375229 Sample_02_1169 Biliary H69_TGF beta_16h_2 745 7 665 54 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_081601567 chr19:8352146-8374160 Sample_02_0816 Ovary Clear cell ovarian cancer 1567 12 621 52 3 62 797 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_076300577 chr19:8352206-8371068 Sample_02_0763 Podocyte podocyte_DEX 577 3 526 46 3 51 521 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_116600787 chr19:8352255-8375982 Sample_02_1166 Biliary H69_TGF beta_16h_1 787 15 700 57 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_044500636 chr19:8352362-8369342 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 636 7 469 40 3 51 450 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137500461 chr19:8352397-8371120 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 461 15 525 46 3 51 528 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137400536 chr19:8352496-8371219 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 536 13 527 46 3 53 557 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137600563 chr19:8352539-8371217 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 563 15 526 46 3 53 556 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_03_001600479 chr19:8353462-8397778 Sample_03_0016 Lung A549_dexamethasone_6h 479 5 1363 128 3 121 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_01_008200277 chr19:8353576-8398589 Sample_01_0082 Right lobe of liver right-lobe-of-liver 277 6 1385 135 3 121 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_151900480 chr19:8353663-8371377 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 480 15 510 46 3 54 592 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_152000607 chr19:8353732-8371225 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 607 12 498 44 3 52 559 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_151800416 chr19:8353762-8371564 Sample_02_1518 Umbilical vein HUVEC_Scr 416 12 516 45 3 57 633 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_032600249 chr19:8353842-8395282 Sample_02_0326 Liver hepatocytes_d3 249 6 1284 119 3 116 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_032500240 chr19:8354043-8396713 Sample_02_0325 Liver hepatocytes_d1 240 10 1320 121 3 120 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_153200622 chr19:8354130-8373183 Sample_02_1532 Mammary gland MCF10A 622 5 539 45 3 59 663 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153700337 chr19:8354142-8380578 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 337 9 813 64 3 63 941 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_032700302 chr19:8354152-8395278 Sample_02_0327 Liver hepatocytes_d6 302 9 1275 118 3 116 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_001000750 chr19:8354202-8371445 Sample_02_0010 Kidney A-498_emptyvector 750 4 496 44 3 56 605 ANGPTL4,CD320,RAB11B,NDUFA7,MARCH2,KANK3,RPS28
SE_02_026801138 chr19:8354204-8367897 Sample_02_0268 Kidney A-498 1138 5 379 32 2 45 383 ANGPTL4,CD320,RAB11B,NDUFA7,MARCH2,KANK3,RPS28
SE_02_053000985 chr19:8354231-8375202 Sample_02_0530 Mammary gland MCF10A 985 12 605 49 3 63 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153600617 chr19:8354323-8367938 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 617 5 374 31 2 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_019400172 chr19:8354600-8375628 Sample_02_0194 Kidney Patient_x750T 172 3 614 47 3 63 889 ANGPTL4,CD320,RAB11B,NDUFA7,MARCH2,KANK3,RPS28
SE_01_006900495 chr19:8354780-8395999 Sample_01_0069 Adrenal gland adrenal-gland 495 6 1274 116 3 116 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_105400882 chr19:8354798-8367962 Sample_02_1054 Esophagus SKGT4 882 4 360 27 2 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_01_007200221 chr19:8354928-8405145 Sample_01_0072 Breast epithelium breast-epithelium 221 8 1612 159 4 161 1986 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_153400761 chr19:8355029-8367402 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 761 4 339 24 2 35 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_01_007500649 chr19:8355037-8396687 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 649 8 1288 115 3 120 1243 RAB11B,ANGPTL4,CD320,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_02_153500295 chr19:8355056-8367431 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 295 5 339 24 2 38 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137701114 chr19:8355113-8368588 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1114 6 369 28 3 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_061300598 chr19:8355118-8374042 Sample_02_0613 Liposarcoma MLPS_T1 598 9 531 42 3 61 774 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_072500592 chr19:8355335-8374710 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 592 5 552 40 3 63 879 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_147100819 chr19:8359996-8369650 Sample_02_1471 Blood Outgrowth Endothelia BOEC 819 1 271 20 3 50 474 ANGPTL4,RAB11B,RAB11B-AS1,NDUFA7,KANK3,MARCH2,MIR4999,RPS28
SE_01_000100105 chr19:8361699-8395785 Sample_01_0001 Prostate 22Rv1 105 4 1071 99 3 113 1243 RAB11B,ANGPTL4,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_01_007100188 chr19:8361700-8395344 Sample_01_0071 Pancreas body-of-pancreas 188 6 1055 96 3 113 1243 RAB11B,ANGPTL4,NDUFA7,HNRNPM,MARCH2,KANK3,RPS28
SE_00_003000447 chr19:8361720-8374146 Sample_00_0030 Pancreas pancreas 447 5 346 26 3 58 794 ANGPTL4,KANK3,RAB11B,NDUFA7,MARCH2,RPS28
SE_01_000200153 chr19:8361837-8389821 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 153 4 887 77 3 60 983 ANGPTL4,KANK3,RAB11B,NDUFA7,MARCH2,RPS28
Genomic distribution of SEs associated with RPS28
Genome Browser

The strength of the tissue affected by the gene

Expression of RPS28

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)