SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000182175
Gene: RGMA Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:93035273-93089204 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900330 chr15:92908770-93049286 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 330 79 4305 113 18 377 3040 CHD2,RGMA,MIR3175,LINC01578
SE_02_104701257 chr15:92989056-93051732 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1257 22 2166 34 8 210 1906 CHD2,RGMA
SE_02_155400018 chr15:93021616-93091176 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 18 13 2564 38 7 322 2287 CHD2,RGMA
SE_00_005501033 chr15:93024780-93037436 Sample_00_0055 Spleen spleen 34y 1033 2 499 2 2 23 474 CHD2,RGMA
SE_02_104800965 chr15:93024825-93053556 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 965 8 1244 2 4 107 1232 CHD2,RGMA
SE_02_119500085 chr15:93024874-93089281 Sample_02_1195 Brain GBM29 85 26 2426 38 6 284 2067 CHD2,RGMA
SE_02_119100093 chr15:93024908-93089678 Sample_02_1191 Brain GBM25 93 26 2434 38 6 294 2110 CHD2,RGMA
SE_02_095300063 chr15:93024960-93090219 Sample_02_0953 Brain H3.3K27M_1840 63 21 2449 38 6 299 2094 CHD2,RGMA
SE_02_121000048 chr15:93024993-93087969 Sample_02_1210 Brain GBM17 48 30 2381 34 6 256 1734 CHD2,RGMA
SE_02_119200556 chr15:93025067-93049184 Sample_02_1192 Brain GBM26 556 6 1041 2 4 59 993 CHD2,RGMA
SE_02_097700119 chr15:93025116-93088973 Sample_02_0977 Brain 2089_H3.3K27WT 119 23 2414 38 6 278 1920 CHD2,RGMA
SE_02_120200107 chr15:93025165-93089318 Sample_02_1202 Brain GBM38 107 19 2419 38 6 289 2027 CHD2,RGMA
SE_02_095400035 chr15:93025240-93091136 Sample_02_0954 Brain H3.3K27WT_2192 35 27 2464 38 6 306 2045 CHD2,RGMA
SE_02_119700012 chr15:93025335-93090239 Sample_02_1197 Brain GBM33 12 30 2436 38 6 296 2026 CHD2,RGMA
SE_02_118100037 chr15:93025341-93089108 Sample_02_1181 Brain GBM10 37 22 2405 38 6 280 1923 CHD2,RGMA
SE_02_120100021 chr15:93025351-93089816 Sample_02_1201 Brain GBM37 21 20 2420 38 6 292 2025 CHD2,RGMA
SE_02_118300058 chr15:93025400-93090241 Sample_02_1183 Brain GBM12 58 33 2435 38 6 296 2021 CHD2,RGMA
SE_02_119600157 chr15:93025431-93090185 Sample_02_1196 Brain GBM32 157 36 2430 38 6 296 2018 CHD2,RGMA
SE_02_104600465 chr15:93025484-93080736 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 465 33 2166 30 5 236 1650 CHD2,RGMA
SE_02_125200591 chr15:93025633-93064753 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 591 14 1651 11 5 129 1080 CHD2,RGMA
SE_02_119000051 chr15:93026164-93089633 Sample_02_1190 Brain GBM24 51 24 2402 38 6 288 1921 CHD2,RGMA
SE_02_095600055 chr15:93026194-93089646 Sample_02_0956 Brain IDH1_2658 55 26 2402 38 6 288 1918 CHD2,RGMA
SE_02_119300081 chr15:93026235-93089718 Sample_02_1193 Brain GBM27 81 29 2402 38 6 288 1914 CHD2,RGMA
SE_02_118200034 chr15:93026261-93089041 Sample_02_1182 Brain GBM11 34 25 2388 38 6 276 1785 CHD2,RGMA
SE_02_097900070 chr15:93026303-93088025 Sample_02_0979 Brain JN14-BS1_H3.3K27M 70 30 2350 34 6 252 1548 CHD2,RGMA
SE_02_096900462 chr15:93026351-93069883 Sample_02_0969 Brain H3.3K27M_PL637 462 20 1796 18 5 134 1205 CHD2,RGMA
SE_02_117600321 chr15:93026384-93089238 Sample_02_1176 Brain GBM04 321 18 2387 38 6 278 1823 CHD2,RGMA
SE_02_118400169 chr15:93026391-93090258 Sample_02_1184 Brain GBM13 169 44 2415 38 6 293 1891 CHD2,RGMA
SE_01_010700283 chr15:93026427-93091696 Sample_01_0107 Esophagus esophagus squamous epithelium 283 20 2457 40 7 306 1883 CHD2,RGMA
SE_02_138500291 chr15:93026450-93074011 Sample_02_1385 Other iPSCs 291 16 1933 26 5 219 1497 CHD2,RGMA
SE_02_096600074 chr15:93026455-93088007 Sample_02_0966 Brain H3.3K27M_JN29-BS3 74 30 2345 34 6 252 1519 CHD2,RGMA
SE_02_061400402 chr15:93026536-93094517 Sample_02_0614 Liposarcoma MLPS_T2 402 12 2543 43 7 308 1862 CHD2,RGMA
SE_02_118700033 chr15:93026574-93090244 Sample_02_1187 Brain GBM16 33 19 2412 38 6 293 1858 CHD2,RGMA
SE_02_119800158 chr15:93026653-93089186 Sample_02_1198 Brain GBM34 158 20 2377 38 6 278 1762 CHD2,RGMA
SE_02_074800530 chr15:93027296-93073963 Sample_02_0748 Mammary gland HCC1599_WO 530 9 1913 26 5 215 1369 CHD2,RGMA
SE_02_074900609 chr15:93027378-93073982 Sample_02_0749 Mammary gland HCC1599_GSI 609 13 1912 26 5 215 1367 CHD2,RGMA
SE_02_141300054 chr15:93027400-93104449 Sample_02_1413 Muscle RH4_sgBRG1 54 29 2832 49 8 315 1745 CHD2,RGMA
SE_02_093100009 chr15:93027478-93099276 Sample_02_0931 Embryo H9 UTXKO 9 23 2675 47 8 304 1731 CHD2,RGMA
SE_02_155300276 chr15:93028166-93080736 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 276 24 2103 30 5 221 1299 RGMA
SE_02_138400415 chr15:93029643-93067764 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 415 13 1647 17 5 116 960 RGMA
SE_02_048900380 chr15:93036417-93049533 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 380 5 618 0 2 39 567 RGMA
SE_01_009500210 chr15:93042914-93086696 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 210 22 1609 32 2 228 1296 RGMA
SE_02_096700269 chr15:93050568-93089165 Sample_02_0967 Brain H3.3K27M_JN57 269 8 1326 36 2 221 999 RGMA
SE_01_009700293 chr15:93051266-93091750 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 293 7 1373 39 3 243 1086 RGMA
SE_01_009400372 chr15:93051425-93092225 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 372 13 1381 40 3 244 1086 RGMA
SE_02_120000257 chr15:93055713-93090154 Sample_02_1200 Brain GBM36 257 6 1119 36 2 191 891 RGMA
SE_02_055500542 chr15:93056512-93073910 Sample_02_0555 Other HAP1_WT 542 5 599 24 1 118 492 RGMA
SE_02_068100159 chr15:93057734-93071275 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 159 13 465 17 1 48 198 RGMA
SE_02_093400070 chr15:93059296-93089345 Sample_02_0934 Embryo H7-WT 70 9 961 35 1 179 871 RGMA
SE_02_068000287 chr15:93059617-93071061 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 287 7 388 16 0 40 198 RGMA
SE_02_117500741 chr15:93059727-93086778 Sample_02_1175 Brain GBM03 741 9 881 30 1 144 534 RGMA
SE_02_093200061 chr15:93059876-93099246 Sample_02_0932 Embryo H9 WT_1 61 10 1252 43 3 201 891 RGMA
SE_02_067900505 chr15:93059993-93070573 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 505 7 360 13 0 36 198 RGMA
SE_02_093300021 chr15:93060393-93090259 Sample_02_0933 Embryo H7 UTXKO 21 11 953 31 1 186 891 RGMA
SE_02_080100058 chr15:93061237-93087385 Sample_02_0801 Brain 2235 58 8 845 26 1 144 534 RGMA
SE_02_117800444 chr15:93061313-93089249 Sample_02_1178 Brain GBM07 444 5 894 30 1 171 826 RGMA
SE_02_117401152 chr15:93061367-93087954 Sample_02_1174 Brain GBM02 1152 10 850 26 1 145 534 RGMA
SE_02_118900291 chr15:93061413-93089287 Sample_02_1189 Brain GBM22 291 11 892 30 1 171 844 RGMA
SE_02_084000830 chr15:93061721-93089272 Sample_02_0840 Embryo hNPCs_R1159Q/+ 830 5 881 30 1 171 839 RGMA
SE_02_118500662 chr15:93062109-93089819 Sample_02_1185 Brain GBM14 662 11 879 30 1 172 891 RGMA
SE_02_118600898 chr15:93062190-93086653 Sample_02_1186 Brain GBM15 898 4 800 26 1 133 534 RGMA
SE_02_119400649 chr15:93062695-93090139 Sample_02_1194 Brain GBM28 649 5 874 29 1 174 891 RGMA
SE_02_104600504 chr15:93097437-93365856 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 504 55 9348 114 41 575 238 RGMA
SE_02_141300454 chr15:93121410-93180347 Sample_02_1413 Muscle RH4_sgBRG1 454 29 2156 22 9 151 0 RGMA
SE_02_004000888 chr15:93124040-93146934 Sample_02_0040 Embryo PFG 888 6 801 9 4 57 0 RGMA
SE_02_118100764 chr15:93138284-93155451 Sample_02_1181 Brain GBM10 764 5 639 20 2 49 0 RGMA
SE_02_119301141 chr15:93138518-93180440 Sample_02_1193 Brain GBM27 1141 11 1595 20 6 84 0 RGMA
SE_02_118700562 chr15:93138566-93155338 Sample_02_1187 Brain GBM16 562 6 630 20 2 49 0 RGMA
SE_02_119701055 chr15:93138646-93160246 Sample_02_1197 Brain GBM33 1055 16 838 19 3 71 0 RGMA
Genomic distribution of SEs associated with RGMA
Genome Browser

The strength of the tissue affected by the gene

Expression of RGMA

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)