SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000090565
Gene: RAB11FIP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:425649-523011 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104801697 chr16:373140-384252 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1697 4 493 72 0 83 1383 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_103500434 chr16:375597-385151 Sample_02_1035 Mammary gland HCC70_Vehicle 434 8 392 55 0 61 978 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_104701436 chr16:375680-380321 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1436 1 253 38 0 43 539 TMEM8A,LOC100134368,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_129900242 chr16:378125-390164 Sample_02_1299 Liver liver 242 2 426 56 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_129600249 chr16:378419-390749 Sample_02_1296 Perigastric lymph node Perigastric lymph node 249 4 450 62 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_003601560 chr16:378531-386663 Sample_02_0036 Embryo H7 1560 4 294 43 0 30 461 LOC100134368,TMEM8A,DECR2,RAB11FIP3,AXIN1,NME4,MRPL28
SE_02_001700493 chr16:378546-384719 Sample_02_0017 Embryo H9_ESC 493 3 195 29 0 30 437 LOC100134368,TMEM8A,DECR2,RAB11FIP3,AXIN1,NME4,MRPL28
SE_01_002200303 chr16:378557-384838 Sample_01_0022 Prostate C4-2B 303 2 199 29 0 30 437 LOC100134368,TMEM8A,DECR2,RAB11FIP3,AXIN1,NME4,MRPL28
SE_02_098901820 chr16:378585-389707 Sample_02_0989 Kidney kidney cortex_WT 1820 4 400 53 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_01_010101372 chr16:378639-388686 Sample_01_0101 Pancreas pancreas_54y 1372 3 361 48 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_075600863 chr16:378655-389522 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 863 5 391 51 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_129800202 chr16:378719-391009 Sample_02_1298 Hilar lymph node Hilar lymph node 202 4 447 63 0 30 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_075300750 chr16:378847-389705 Sample_02_0753 Embryo ES-derived progenitors_FG type 750 5 394 51 0 26 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_067201088 chr16:378867-385161 Sample_02_0672 Endometrium endometrium cancer_DSG 1088 3 201 26 0 26 437 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_096200944 chr16:379045-387067 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 944 3 294 40 0 26 516 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_063400368 chr16:379299-390822 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 368 2 410 56 0 18 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_066900496 chr16:379468-390063 Sample_02_0669 Prostate prostate cancer_DSG 496 5 374 50 0 18 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_067400808 chr16:379485-385099 Sample_02_0674 Endometrium E1_FA 808 2 165 23 0 18 437 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_064501504 chr16:379500-384253 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1504 2 137 21 0 18 437 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_092901224 chr16:379565-387440 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1224 5 275 37 0 18 559 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_066800171 chr16:379851-389790 Sample_02_0668 Prostate prostate cancer FA 171 8 349 49 0 18 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_063300155 chr16:380326-391335 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 155 1 384 51 0 18 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_063200188 chr16:380601-391216 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 188 1 370 50 0 18 571 LOC100134368,TMEM8A,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28
SE_02_129700560 chr16:382070-390338 Sample_02_1297 Lung lung 560 1 310 39 0 0 359 LOC100134368,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_074801022 chr16:382094-388128 Sample_02_0748 Mammary gland HCC1599_WO 1022 1 226 28 0 0 347 LOC100134368,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_074900755 chr16:382102-388505 Sample_02_0749 Mammary gland HCC1599_GSI 755 1 241 29 0 0 343 LOC100134368,DECR2,NME4,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_074601094 chr16:384126-399831 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1094 6 602 95 2 20 864 LOC100134368,NME4,DECR2,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_074500524 chr16:386018-400194 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 524 2 535 86 2 20 912 LOC100134368,NME4,DECR2,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_043100159 chr16:386730-403029 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 159 3 606 91 2 22 1193 LOC100134368,NME4,DECR2,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_111600768 chr16:386829-406533 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 768 6 745 100 2 27 1372 LOC100134368,NME4,DECR2,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_109500495 chr16:395994-402498 Sample_02_1095 Blood CD34 Erythroid cells_Don002 495 1 256 39 2 22 853 DECR2,NME4,LOC100134368,RAB11FIP3,AXIN1,MRPL28,TMEM8A
SE_02_027401119 chr16:423393-427225 Sample_02_0274 Endometriosis hTERT_KD 1119 1 92 7 0 39 390 RAB11FIP3,LOC100134368,DECR2,NME4,TMEM8A
SE_02_039601617 chr16:423525-427615 Sample_02_0396 Skin NHEK-D 1617 1 105 8 0 39 390 RAB11FIP3,LOC100134368,DECR2,NME4,TMEM8A
SE_01_000200122 chr16:456449-459059 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 122 1 92 7 0 3 0 RAB11FIP3
SE_02_077502161 chr16:466105-468515 Sample_02_0775 Pancreas EndoC-BH1_SE 2161 1 63 4 0 0 0 RAB11FIP3
SE_00_002000592 chr16:523865-544713 Sample_00_0020 Large intestine large-intestine_108d 592 4 925 59 1 37 1542 MIR3176,SOLH,NCRNA00235,RAB11FIP3,PIGQ,RAB40C,C16ORF11,NHLRC4
SE_02_039600552 chr16:523902-532006 Sample_02_0396 Skin NHEK-D 552 1 318 19 1 13 440 SOLH,NCRNA00235,RAB11FIP3,PIGQ,C16ORF11,NHLRC4,MIR3176
SE_02_027400375 chr16:524085-541200 Sample_02_0274 Endometriosis hTERT_KD 375 3 712 45 1 37 1438 SOLH,NCRNA00235,RAB11FIP3,PIGQ,RAB40C,C16ORF11,MIR3176,NHLRC4
SE_02_006800782 chr16:524371-536194 Sample_02_0068 Skin A375_DMSO 782 2 475 31 1 18 719 SOLH,NCRNA00235,RAB11FIP3,PIGQ,C16ORF11,NHLRC4,MIR3176
SE_01_007900412 chr16:524628-536729 Sample_01_0079 Peyers patch Peyers-patch 412 2 473 32 1 17 758 SOLH,NCRNA00235,RAB11FIP3,PIGQ,C16ORF11,NHLRC4,MIR3176
SE_00_003600453 chr16:524762-544546 Sample_00_0036 Small intestine small-intestine_108days 453 4 886 58 1 35 1542 MIR3176,SOLH,NCRNA00235,RAB11FIP3,PIGQ,RAB40C,C16ORF11,NHLRC4
SE_01_003700972 chr16:524814-536574 Sample_01_0037 Liver hepatocyte 972 2 463 30 1 17 758 SOLH,NCRNA00235,RAB11FIP3,PIGQ,C16ORF11,NHLRC4,MIR3176
Genomic distribution of SEs associated with RAB11FIP3
Genome Browser

The strength of the tissue affected by the gene

Expression of RAB11FIP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)