SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000141956
Gene: PRDM15 Gene type: protein_coding
Strand: - External links:
Genomic region: chr21:41798225-41879482 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600572 chr21:41777934-41869006 Sample_02_1036 Mammary gland HCC70_XY018 572 32 3075 373 13 183 2913 PRDM15,MIR6814,RIPK4
SE_02_104600367 chr21:41794951-41907145 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 367 40 3832 421 19 223 4338 C2CD2,PRDM15,RIPK4,MIR6814
SE_02_143201245 chr21:41799719-41877143 Sample_02_1432 Bone A673 STAG2 WT 1245 38 2705 311 13 167 2817 PRDM15,RIPK4,C2CD2
SE_02_143301600 chr21:41799768-41876714 Sample_02_1433 Bone A673 STAG2 null 1600 33 2691 310 13 167 2807 PRDM15,RIPK4,C2CD2
SE_02_104700098 chr21:41801168-41977917 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 98 72 5854 541 24 309 4934 C2CD2,PRDM15,RIPK4,ZBTB21,ZNF295-AS1
SE_02_077900016 chr21:41810065-41934986 Sample_02_0779 Lymphoma U2932 16 33 4187 398 17 224 4260 C2CD2,PRDM15,RIPK4
SE_02_078100092 chr21:41815562-41900691 Sample_02_0781 Lymphoma Pfeiffer_DMSO 92 26 2927 334 14 145 3199 C2CD2,PRDM15,RIPK4
SE_02_104301900 chr21:41816516-41858066 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1900 10 1407 175 4 102 1492 PRDM15,RIPK4
SE_02_081700284 chr21:41816819-41886572 Sample_02_0817 Ovary Epithelial ovarian cancer 284 14 2374 276 10 130 2625 C2CD2,PRDM15,RIPK4
SE_02_121800019 chr21:41830754-41880527 Sample_02_1218 Bone marrow Daudi 19 19 1686 194 9 77 1752 PRDM15,C2CD2
SE_02_122400349 chr21:41830754-41886434 Sample_02_1224 Bone marrow normal plasma cell 349 28 1873 213 10 83 1942 C2CD2,PRDM15
SE_02_130200100 chr21:41831039-41896340 Sample_02_1302 Lymphoma RL DMSO 100 14 2176 250 10 85 2288 C2CD2,PRDM15
SE_02_115300059 chr21:41831550-41895828 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 59 12 2132 248 10 82 2288 C2CD2,PRDM15
SE_02_130300060 chr21:41832117-41896681 Sample_02_1303 Lymphoma RL_tazemetostat 60 22 2138 248 10 87 2288 C2CD2,PRDM15
SE_02_130400110 chr21:41832295-41896814 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 110 21 2137 247 10 87 2288 C2CD2,PRDM15
SE_02_115500082 chr21:41860515-41880449 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 82 2 685 76 5 18 676 PRDM15,C2CD2
SE_02_115400212 chr21:41860675-41880368 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 212 4 679 76 5 18 669 PRDM15,C2CD2
SE_02_099900292 chr21:41860782-41878800 Sample_02_0999 Lymphoma OCI-LY1_966 292 11 642 72 5 7 382 PRDM15,C2CD2
SE_02_122500120 chr21:41860805-41880528 Sample_02_1225 Bone marrow RAJI 120 8 683 76 5 18 669 PRDM15,C2CD2
SE_02_099800228 chr21:41860993-41878811 Sample_02_0998 Lymphoma OCI-LY1_DMSO 228 4 639 72 5 7 384 PRDM15,C2CD2
SE_01_009600143 chr21:41861097-41896579 Sample_01_0096 B-cell lymphoma DOHH2 143 3 1192 135 6 32 1205 C2CD2,PRDM15
SE_02_115200154 chr21:41861200-41880465 Sample_02_1152 Lymphoma RL_WT_gRNA1 154 2 673 76 5 18 669 PRDM15,C2CD2
SE_02_078300548 chr21:41861696-41880537 Sample_02_0783 Blood MEC2 548 2 662 74 5 18 610 PRDM15,C2CD2
SE_02_115600312 chr21:41864485-41885658 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 312 11 705 78 5 20 649 C2CD2,PRDM15
SE_02_115700302 chr21:41864509-41885849 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 302 17 713 79 6 23 676 C2CD2,PRDM15
SE_02_088500166 chr21:41865195-41900797 Sample_02_0885 Blood NALM6_2 166 9 1198 132 10 36 1220 C2CD2,PRDM15
SE_02_073900607 chr21:41865419-41900606 Sample_02_0739 Blood Nalm6 607 11 1183 129 8 36 1216 C2CD2,PRDM15
SE_02_104300546 chr21:41871718-41935734 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 546 29 2042 153 9 101 1968 C2CD2,PRDM15
SE_02_044400645 chr21:41876403-41897388 Sample_02_0444 Bone osteosarcoma tumor P10 645 5 664 74 1 30 908 C2CD2,PRDM15
SE_00_005100034 chr21:41884325-41974255 Sample_00_0051 Adrenal gland adrenal gland 30y 34 79 2863 199 9 128 1935 C2CD2,ZBTB21,ZNF295-AS1,PRDM15
SE_02_046500100 chr21:41886644-41959211 Sample_02_0465 Adipose subcutaneous adipocytes 100 43 2278 141 8 115 1719 C2CD2,PRDM15,ZNF295-AS1
SE_02_046600627 chr21:41894940-41958760 Sample_02_0466 Adipose visceral adipocytes 627 21 1996 105 8 111 1399 C2CD2,PRDM15
SE_02_104801808 chr21:41913301-41948402 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1808 6 1078 42 4 48 428 C2CD2,PRDM15
SE_02_112500457 chr21:41916290-41933857 Sample_02_1125 Adipose visceral adipose_CS_VC06 457 5 530 14 2 37 260 C2CD2,PRDM15
SE_02_141600137 chr21:41919460-41959302 Sample_02_1416 Brain SF9402 137 6 1185 52 3 72 468 C2CD2,ZNF295-AS1,PRDM15
SE_02_104603388 chr21:41919808-41944144 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3388 8 750 30 3 35 187 C2CD2,PRDM15
SE_01_008401573 chr21:41920319-41959056 Sample_01_0084 Spleen spleen 1573 11 1149 51 3 71 468 C2CD2,PRDM15
SE_02_108300940 chr21:41920661-41958801 Sample_02_1083 Macula macula 940 12 1129 49 3 71 468 C2CD2,PRDM15
SE_01_010600042 chr21:41920809-41959205 Sample_01_0106 Adrenal gland adrenal gland 54y 42 11 1140 51 3 72 468 C2CD2,ZNF295-AS1,PRDM15
SE_02_082100525 chr21:41921479-41934283 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 525 4 374 8 2 34 116 C2CD2,PRDM15
SE_02_048300246 chr21:41921486-41934138 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 246 6 369 8 2 34 116 C2CD2,PRDM15
SE_02_048200390 chr21:41921583-41933965 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 390 5 365 8 2 34 116 C2CD2,PRDM15
SE_01_010800037 chr21:41921637-41957463 Sample_01_0108 Adrenal gland adrenal gland_37y 37 13 1062 41 3 65 468 C2CD2,PRDM15
SE_02_005600928 chr21:41921732-41934674 Sample_02_0056 Mammary gland HMEC 928 5 379 8 2 34 116 C2CD2,PRDM15
SE_02_131000766 chr21:41922182-41934404 Sample_02_1310 Bone marrow ASMSCs 766 4 353 8 1 23 76 C2CD2,PRDM15
SE_02_044500260 chr21:41922251-41958872 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 260 8 1090 48 2 60 417 C2CD2,PRDM15
SE_01_008801301 chr21:41922271-41959557 Sample_01_0088 Tibial nerve tibial-nerve 1301 5 1110 50 2 67 417 C2CD2,PRDM15
SE_02_063800818 chr21:41922282-41934323 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 818 8 348 8 1 23 65 C2CD2,PRDM15
SE_02_131100935 chr21:41922294-41934037 Sample_02_1311 Bone marrow HDMSCs 935 4 341 8 1 23 65 C2CD2,PRDM15
SE_02_103500579 chr21:41922543-41972030 Sample_02_1035 Mammary gland HCC70_Vehicle 579 10 1542 93 2 68 417 C2CD2,ZNF295-AS1,ZBTB21,PRDM15
SE_01_005601146 chr21:41922559-41934656 Sample_01_0056 Bone osteoblast 1146 3 352 8 1 23 65 C2CD2,PRDM15
SE_02_053300958 chr21:41922959-41959353 Sample_02_0533 Blood vessel Circle of Willis_54y 958 10 1088 49 2 64 417 C2CD2,ZNF295-AS1,PRDM15
SE_00_000300214 chr21:41923338-41974674 Sample_00_0003 Adrenal gland adrenal-gland_97d 214 14 1593 97 2 68 417 C2CD2,C21ORF121,ZNF295,PRDM15
SE_02_044200307 chr21:41923413-41967912 Sample_02_0442 Bone MG63.3 307 22 1358 70 1 67 417 C2CD2,ZNF295-AS1,PRDM15,ZBTB21
SE_02_105000201 chr21:41923635-41967063 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 201 17 1330 68 1 67 417 C2CD2,ZNF295-AS1,PRDM15,ZBTB21
SE_02_039600850 chr21:41923678-41974602 Sample_02_0396 Skin NHEK-D 850 13 1582 96 1 67 417 C2CD2,C21ORF121,ZNF295,PRDM15
SE_02_082000796 chr21:41928269-41934080 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 796 2 161 7 0 6 0 C2CD2,PRDM15
Genomic distribution of SEs associated with PRDM15
Genome Browser

The strength of the tissue affected by the gene

Expression of PRDM15

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)