SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000100417
Gene: PMM1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:41576900-41589871 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010700435 chr22:41467753-41540354 Sample_01_0107 Esophagus esophagus squamous epithelium 435 23 1884 135 3 207 2787 ACO2,PHF5A,POLR3H,CSDC2,PMM1,TOB2,TEF
SE_02_146800874 chr22:41467796-41540778 Sample_02_1468 Blood HUDEP-2_WT 874 14 1886 135 3 214 2858 ACO2,PHF5A,POLR3H,CSDC2,PMM1,TOB2
SE_01_009400116 chr22:41468116-41539950 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 116 8 1864 134 3 206 2703 ACO2,PHF5A,POLR3H,CSDC2,PMM1,TOB2
SE_02_090800547 chr22:41470303-41540479 Sample_02_0908 Heart left ventricle_DCM_LV1262 547 44 1799 127 3 172 2565 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_01_007400243 chr22:41472901-41540301 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 243 11 1741 122 2 168 2533 ACO2,POLR3H,TOB2,PHF5A,CSDC2,PMM1
SE_02_119500102 chr22:41473151-41540480 Sample_02_1195 Brain GBM29 102 34 1745 122 2 169 2566 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_120300118 chr22:41473802-41541686 Sample_02_1203 Brain NB1 118 24 1759 120 2 178 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_119400160 chr22:41474010-41541514 Sample_02_1194 Brain GBM28 160 32 1749 120 2 178 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_01_008300248 chr22:41475177-41540274 Sample_01_0083 Sigmoid colon sigmoid-colon 248 9 1687 118 2 168 2530 ACO2,POLR3H,TOB2,PHF5A,CSDC2,PMM1
SE_01_007700218 chr22:41475233-41540283 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 218 11 1686 118 2 168 2532 ACO2,POLR3H,TOB2,PHF5A,CSDC2,PMM1
SE_02_118100021 chr22:41477396-41569494 Sample_02_1181 Brain GBM10 21 30 2327 192 2 242 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_119700130 chr22:41477538-41566031 Sample_02_1197 Brain GBM33 130 45 2246 181 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_096900113 chr22:41477601-41541115 Sample_02_0969 Brain H3.3K27M_PL637 113 27 1644 115 2 177 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_117300150 chr22:41477745-41557872 Sample_02_1173 Brain GBM01 150 31 2062 159 2 188 2855 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_119600213 chr22:41477994-41566061 Sample_02_1196 Brain GBM32 213 39 2238 181 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_095600094 chr22:41478153-41569261 Sample_02_0956 Brain IDH1_2658 94 29 2301 190 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_097900059 chr22:41478165-41575686 Sample_02_0979 Brain JN14-BS1_H3.3K27M 59 36 2486 204 2 276 3513 ACO2,CSDC2,POLR3H,PHF5A,DESI1,XRCC6,PMM1,TOB2
SE_02_120400115 chr22:41478172-41542027 Sample_02_1204 Brain NB2 115 20 1657 116 2 178 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_096700009 chr22:41478185-41575751 Sample_02_0967 Brain H3.3K27M_JN57 9 45 2487 204 2 276 3528 ACO2,CSDC2,POLR3H,PHF5A,DESI1,XRCC6,PMM1,TOB2
SE_02_117600199 chr22:41478202-41540954 Sample_02_1176 Brain GBM04 199 22 1631 115 2 177 2640 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_119000069 chr22:41478213-41569589 Sample_02_1190 Brain GBM24 69 32 2310 192 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_121300089 chr22:41478278-41569079 Sample_02_1213 Brain GBM31 89 26 2294 189 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_02_117800459 chr22:41478304-41540380 Sample_02_1178 Brain GBM07 459 11 1619 115 2 167 2544 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_046600708 chr22:41478531-41541431 Sample_02_0466 Adipose visceral adipocytes 708 39 1635 114 2 177 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_120200295 chr22:41478656-41566045 Sample_02_1202 Brain GBM38 295 22 2224 180 2 241 2959 ACO2,CSDC2,POLR3H,PHF5A,PMM1,TOB2
SE_01_009300798 chr22:41478721-41542410 Sample_01_0093 Aorta ascending aorta 798 23 1653 115 2 178 2649 ACO2,POLR3H,PHF5A,CSDC2,PMM1,TOB2
SE_02_050600755 chr22:41503544-41542017 Sample_02_0506 Esophagus TE5_1 755 23 1065 75 2 150 2586 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_051700768 chr22:41503552-41542010 Sample_02_0517 Esophagus TE5 768 21 1065 75 2 150 2586 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_117700358 chr22:41506587-41569335 Sample_02_1177 Brain GBM05 358 16 1620 145 2 212 2896 ACO2,CSDC2,POLR3H,PHF5A,PMM1
SE_02_095500446 chr22:41507668-41540307 Sample_02_0955 Brain IDH1_2469 446 8 917 68 2 138 2457 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_114500627 chr22:41507792-41540384 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 627 15 912 67 2 138 2442 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_093500708 chr22:41508513-41541270 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 708 11 912 66 2 140 2470 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_076500581 chr22:41510330-41544952 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 581 15 975 75 2 146 2676 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_074601065 chr22:41510578-41541642 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1065 17 873 64 2 138 2470 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_104300669 chr22:41512895-41555729 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 669 20 1171 99 1 133 2591 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_104800816 chr22:41514514-41540435 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 816 16 756 57 1 112 2290 ACO2,POLR3H,PHF5A,CSDC2,PMM1
SE_02_076600982 chr22:41541228-41567225 Sample_02_0766 Ovary PEO1 982 9 622 69 0 64 310 POLR3H,CSDC2,PMM1
SE_02_124200592 chr22:41554183-41566398 Sample_02_1242 Skin UISO_virus_negative 592 4 282 36 0 56 104 CSDC2,POLR3H,PMM1
SE_02_021100575 chr22:41555088-41575690 Sample_02_0211 Lung MRC-5_NFD_1DPT 575 6 504 52 0 91 658 CSDC2,POLR3H,XRCC6,PPPDE2,PMM1
SE_00_001500637 chr22:41556217-41566330 Sample_00_0015 Lung IMR-90 637 3 238 27 0 56 104 CSDC2,POLR3H,PMM1
SE_01_009100660 chr22:41556629-41576075 Sample_01_0091 Uterus uterus 660 2 488 49 0 91 757 CSDC2,POLR3H,XRCC6,PPPDE2,PMM1
SE_02_113600387 chr22:41556830-41567078 Sample_02_1136 Bone U2OS-anaphase/telophase 387 3 249 28 0 56 104 CSDC2,POLR3H,PMM1
SE_00_005200866 chr22:41557098-41566149 Sample_00_0052 Heart left ventricle 3y 866 5 211 24 0 56 104 CSDC2,POLR3H,PMM1
SE_02_123500482 chr22:41559296-41569331 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 482 3 231 28 0 53 104 CSDC2,POLR3H,PMM1
SE_02_097200762 chr22:41559575-41567293 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 762 1 184 20 0 53 104 CSDC2,POLR3H,PMM1
SE_00_002900274 chr22:41559997-41563840 Sample_00_0029 Ovary ovary 274 1 87 10 0 45 104 CSDC2,POLR3H,PMM1
SE_02_050600448 chr22:41596047-41643463 Sample_02_0506 Esophagus TE5_1 448 12 1199 128 2 118 1372 XRCC6,DESI1,CSDC2,PMM1,C22ORF46,SNU13
SE_02_158300199 chr22:41597130-41683319 Sample_02_1583 Fetal lung IMR90_empty_GM 199 24 2207 232 3 149 2252 SNU13,XRCC6,DESI1,CSDC2,MEI1,PMM1,C22ORF46
SE_02_032601111 chr22:41612733-41622677 Sample_02_0326 Liver hepatocytes_d3 1111 2 235 29 1 42 339 XRCC6,PPPDE2,PMM1
SE_02_081601709 chr22:41618867-41631462 Sample_02_0816 Ovary Clear cell ovarian cancer 1709 3 368 43 1 35 396 XRCC6,DESI1,PMM1
SE_00_000900877 chr22:41619012-41622725 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 877 1 98 10 1 32 339 XRCC6,PPPDE2,PMM1
SE_00_000800735 chr22:41619027-41623003 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 735 1 101 10 1 32 339 XRCC6,PPPDE2,PMM1
SE_02_151000126 chr22:41623188-41697754 Sample_02_1510 Lung H3122_LR_Pano 126 40 1967 197 1 99 2049 SNU13,XRCC6,C22ORF46,DESI1,MEI1,PMM1
SE_02_111100846 chr22:41623573-41684021 Sample_02_1111 Other HGrC1_SMAD2/3KO 846 20 1599 162 1 54 1098 SNU13,XRCC6,DESI1,MEI1,PMM1,C22ORF46
Genomic distribution of SEs associated with PMM1
Genome Browser

The strength of the tissue affected by the gene

Expression of PMM1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)