SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000179761
Gene: PIPOX Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:28950513-29057216 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143300688 chr17:28945729-28996498 Sample_02_1433 Bone A673 STAG2 null 688 18 1254 92 9 492 2125 SEZ6,PHF12,FLOT2,LOC101927018,PIPOX,DHRS13
SE_02_105800093 chr17:28946361-28999851 Sample_02_1058 Bone A673_SA2 Rescue 93 20 1317 98 9 516 2125 SEZ6,PHF12,FLOT2,LOC101927018,PIPOX,DHRS13
SE_02_141300423 chr17:28948312-28996023 Sample_02_1413 Muscle RH4_sgBRG1 423 15 1173 86 9 484 2125 SEZ6,PHF12,LOC101927018,PIPOX,DHRS13
SE_02_110500329 chr17:28948666-29011924 Sample_02_1105 Brain NBL-S 329 28 1571 109 8 668 2373 SEZ6,PHF12,LOC101927018,PIPOX,DHRS13
SE_02_039601414 chr17:28948735-29003803 Sample_02_0396 Skin NHEK-D 1414 11 1384 101 8 557 2125 PHF12,SEZ6,PIPOX,DHRS13
SE_02_104600449 chr17:28948932-29027774 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 449 33 2014 155 8 800 2373 SEZ6,PHF12,LOC101927018,PIPOX,TIAF1,DHRS13
SE_02_107900284 chr17:28965841-28993053 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 284 10 633 42 4 214 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_074000198 chr17:28965841-28998524 Sample_02_0740 Muscle RH3 198 8 787 57 5 235 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_093001419 chr17:28966192-28996999 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1419 16 740 54 5 228 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_118300512 chr17:28966943-29008693 Sample_02_1183 Brain GBM12 512 22 1028 69 5 369 692 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_105900784 chr17:28967181-28998692 Sample_02_1059 Bone A673_WT 784 8 756 55 5 233 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_147300785 chr17:28967181-28998692 Sample_02_1473 Bone A-673 785 8 756 55 5 233 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_107800425 chr17:28967481-29006036 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 425 12 948 66 5 333 576 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_143201405 chr17:28967671-28996564 Sample_02_1432 Bone A673 STAG2 WT 1405 17 690 51 5 224 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_118700991 chr17:28967840-29008601 Sample_02_1187 Brain GBM16 991 18 1007 69 5 369 692 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_066300261 chr17:28968275-29021468 Sample_02_0663 Thyroid TT 261 21 1340 95 5 487 692 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_096100434 chr17:28968371-28998800 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 434 7 729 54 5 215 444 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_110600360 chr17:28970343-29006716 Sample_02_1106 Brain NGP 360 22 885 60 5 331 571 SEZ6,LOC101927018,PHF12,PIPOX
SE_02_021600654 chr17:28974074-28999742 Sample_02_0216 Skin NHEK_scramble 654 7 619 44 4 161 323 SEZ6,PHF12,PIPOX
SE_02_129000143 chr17:28977483-29020475 Sample_02_1290 Lung NCI-H69_p8-15 143 13 1114 81 4 403 571 SEZ6,PHF12,PIPOX
SE_02_068100160 chr17:28977766-29003558 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 160 12 668 49 4 192 323 SEZ6,PHF12,PIPOX
SE_02_068000264 chr17:28985157-29003465 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 264 10 479 38 3 127 0 SEZ6,PHF12,PIPOX
SE_02_129200343 chr17:28985340-29000316 Sample_02_1292 Lung JHU-LX110-SCLC PDX 343 5 382 31 3 81 0 SEZ6,PHF12,PIPOX
SE_02_007100054 chr17:28986193-29012238 Sample_02_0071 Lung GLC16_DMSO 54 5 670 45 3 228 248 SEZ6,PHF12,PIPOX
SE_02_156700660 chr17:29009951-29040634 Sample_02_1567 iPSCs CiPSC 660 10 855 77 0 266 0 SEZ6,TIAF1,PIPOX
SE_02_117200685 chr17:29016760-29040609 Sample_02_1172 Embryo H9 WT 685 6 677 62 0 184 0 SEZ6,TIAF1,PIPOX
SE_02_067700339 chr17:29016787-29040225 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 339 6 664 60 0 184 0 SEZ6,TIAF1,PIPOX,CRYBA1,PHF12
SE_02_068000106 chr17:29018627-29040459 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 106 17 612 54 0 177 0 SEZ6,TIAF1,PIPOX,CRYBA1,PHF12
SE_02_068100172 chr17:29018907-29040183 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 172 9 595 52 0 177 0 SEZ6,TIAF1,PIPOX,CRYBA1,PHF12
SE_02_067900340 chr17:29019791-29040130 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 340 9 579 50 0 175 0 SEZ6,TIAF1,PIPOX,CRYBA1,PHF12
SE_02_067800515 chr17:29031604-29040312 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 515 5 227 21 0 64 0 SEZ6,TIAF1,PIPOX
SE_02_117300186 chr17:29057684-29163896 Sample_02_1173 Brain GBM01 186 37 2784 189 14 866 4273 TIAF1,MYO18A,PIPOX
SE_02_074700226 chr17:29060412-29157244 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 226 46 2552 173 13 830 4273 TIAF1,MYO18A,PIPOX
SE_02_121300146 chr17:29060481-29181961 Sample_02_1213 Brain GBM31 146 37 3170 228 19 982 4830 TIAF1,MYO18A,PIPOX
SE_02_007200221 chr17:29064985-29074712 Sample_02_0072 Lung NCI-H82_DMSO 221 3 269 14 1 89 276 TIAF1,MYO18A,PIPOX
SE_02_128800017 chr17:29065240-29176750 Sample_02_1288 Lung NCI-H524_p8-15 17 42 2956 213 17 898 4640 TIAF1,MYO18A,PIPOX
SE_02_036800034 chr17:29069020-29149792 Sample_02_0368 Skeletal muscle NS134 34 9 2172 154 12 707 4273 TIAF1,MYO18A,PIPOX
SE_02_039600081 chr17:29069900-29181955 Sample_02_0396 Skin NHEK-D 81 34 2949 219 19 890 4830 TIAF1,MYO18A,PIPOX
SE_02_129000186 chr17:29070395-29102766 Sample_02_1290 Lung NCI-H69_p8-15 186 7 945 68 4 382 2336 TIAF1,MYO18A,PIPOX
SE_02_104700101 chr17:29073312-29186342 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 101 57 2974 222 18 869 4829 TIAF1,MYO18A,PIPOX
SE_02_098900467 chr17:29076189-29180187 Sample_02_0989 Kidney kidney cortex_WT 467 28 2715 202 17 844 4246 MYO18A,TIAF1,PIPOX,FLOT2
SE_02_096900052 chr17:29076304-29178439 Sample_02_0969 Brain H3.3K27M_PL637 52 29 2678 202 17 819 4223 MYO18A,TIAF1,PIPOX
SE_02_059401148 chr17:29076349-29117808 Sample_02_0594 iPSC-derived neural progenitors 1148 11 1160 90 5 465 2979 MYO18A,TIAF1,PIPOX
SE_02_085700416 chr17:29076545-29115840 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 416 8 1096 84 5 440 2876 MYO18A,TIAF1,PIPOX
SE_02_105800982 chr17:29076569-29124688 Sample_02_1058 Bone A673_SA2 Rescue 982 20 1332 100 7 516 3655 MYO18A,TIAF1,PIPOX
SE_02_120000578 chr17:29076689-29116800 Sample_02_1200 Brain GBM36 578 10 1128 87 5 445 2979 MYO18A,TIAF1,PIPOX
SE_02_119800670 chr17:29076725-29114182 Sample_02_1198 Brain GBM34 670 15 1046 83 5 417 2604 MYO18A,TIAF1,PIPOX
SE_02_138500350 chr17:29076823-29178221 Sample_02_1385 Other iPSCs 350 33 2660 201 17 797 4223 MYO18A,TIAF1,PIPOX
SE_02_080100542 chr17:29076923-29092271 Sample_02_0801 Brain 2235 542 5 457 40 3 215 658 MYO18A,TIAF1,PIPOX
SE_02_079400246 chr17:29076938-29112820 Sample_02_0794 Brain 1552 246 9 1005 77 4 410 2518 MYO18A,TIAF1,PIPOX
SE_02_079800171 chr17:29076953-29117170 Sample_02_0798 Brain 1919 171 14 1128 86 5 444 2979 MYO18A,TIAF1,PIPOX
SE_01_009400248 chr17:29078172-29156646 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 248 20 2062 146 12 667 3808 MYO18A,TIAF1,PIPOX
SE_02_087700417 chr17:29078240-29113522 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 417 15 985 70 4 401 2518 MYO18A,TIAF1,PIPOX
SE_02_143300278 chr17:29078345-29178300 Sample_02_1433 Bone A673 STAG2 null 278 60 2624 193 17 785 4223 MYO18A,TIAF1,PIPOX
SE_01_007600455 chr17:29078491-29157302 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 455 9 2075 146 12 668 3808 MYO18A,PIPOX,TIAF1
SE_01_009800583 chr17:29078850-29157295 Sample_01_0098 Heart left ventricle_51y 583 16 2068 146 12 655 3808 MYO18A,TIAF1,PIPOX
SE_02_095500089 chr17:29079143-29149615 Sample_02_0955 Brain IDH1_2469 89 19 1878 134 11 607 3808 MYO18A,TIAF1,PIPOX
SE_02_138200063 chr17:29080405-29181442 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 63 45 2634 195 17 793 4365 MYO18A,TIAF1,PIPOX
SE_02_104900162 chr17:29080512-29178348 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 162 64 2566 192 17 763 4223 MYO18A,TIAF1,PIPOX
SE_02_030800252 chr17:29082380-29112090 Sample_02_0308 Neuroblastoma SJNB1 252 5 850 64 4 338 2474 MYO18A,PIPOX,TIAF1
SE_02_077501865 chr17:29082456-29089715 Sample_02_0775 Pancreas EndoC-BH1_SE 1865 5 227 24 1 78 319 MYO18A,TIAF1,PIPOX
SE_02_075800064 chr17:29082756-29149628 Sample_02_0758 Peripheral blood REH 64 29 1777 129 11 566 3715 MYO18A,TIAF1,PIPOX
SE_02_124900040 chr17:29084163-29180169 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 40 64 2498 181 17 724 4146 MYO18A,TIAF1,PIPOX
SE_02_097800544 chr17:29084400-29113411 Sample_02_0978 Brain 2168_IDH1 544 5 810 57 4 308 2425 MYO18A,TIAF1,PIPOX
SE_02_074600256 chr17:29085271-29156561 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 256 24 1855 131 12 548 3715 MYO18A,TIAF1,PIPOX
SE_02_074200204 chr17:29087545-29156617 Sample_02_0742 Embryo ESCs_day0 204 16 1778 123 11 534 3430 MYO18A,TIAF1,PIPOX
SE_02_036700041 chr17:29088423-29180305 Sample_02_0367 Skeletal muscle NS129 41 12 2355 168 16 683 3916 MYO18A,PIPOX,TIAF1
SE_00_001001270 chr17:29089318-29103304 Sample_00_0010 Embryo endodermal-cell 1270 2 397 23 2 180 1493 MYO18A,PIPOX,TIAF1
SE_02_138300046 chr17:29089693-29181356 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 46 57 2353 168 16 682 3987 MYO18A,TIAF1,PIPOX
SE_02_069100026 chr17:29089773-29177262 Sample_02_0691 Lung NCI-H524_no infection 26 35 2265 162 15 642 3844 MYO18A,TIAF1,PIPOX
SE_02_116000064 chr17:29091314-29161819 Sample_02_1160 Embryo H1_shLuc 64 16 1786 120 10 527 3174 MYO18A,TIAF1,PIPOX,SEZ6
SE_02_037700065 chr17:29091469-29116244 Sample_02_0377 Skeletal muscle RMS238 65 5 666 44 2 262 2281 MYO18A,PIPOX,TIAF1
Genomic distribution of SEs associated with PIPOX
Genome Browser

The strength of the tissue affected by the gene

Expression of PIPOX

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)