SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000019144
Gene: PHLDB1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:118606440-118658031 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_017200446 chr11:118570922-118635451 Sample_02_0172 Lung IMR-90_quiescent 446 11 1664 114 5 508 2610 ARCN1,PHLDB1,TTC36,IFT46,TMEM25,TREH
SE_01_007000286 chr11:118590568-118638116 Sample_01_0070 Ascending aorta ascending-aorta 286 6 1217 75 6 455 2222 ARCN1,PHLDB1,TREH,IFT46
SE_01_008700516 chr11:118591067-118642102 Sample_01_0087 Thyroid gland thyroid-gland 516 8 1297 83 7 482 2519 ARCN1,PHLDB1,TREH,IFT46
SE_01_008800208 chr11:118591090-118644165 Sample_01_0088 Tibial nerve tibial-nerve 208 8 1355 86 7 498 2773 ARCN1,PHLDB1,TREH,IFT46
SE_01_008100431 chr11:118591201-118641141 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 431 7 1263 82 7 469 2372 ARCN1,PHLDB1,TREH,IFT46
SE_01_007800438 chr11:118591247-118638045 Sample_01_0078 Heart left ventricle heart-left-ventricle 438 9 1188 74 6 455 2215 ARCN1,PHLDB1,TREH,IFT46
SE_01_008900559 chr11:118591457-118636210 Sample_01_0089 Transverse colon transverse-colon 559 6 1132 70 6 452 2215 ARCN1,PHLDB1,TREH,IFT46
SE_02_036600396 chr11:118591500-118634871 Sample_02_0366 Skeletal muscle NCI0082 396 4 1098 69 5 429 2022 ARCN1,PHLDB1,TREH,IFT46
SE_01_007400643 chr11:118591580-118636150 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 643 5 1128 70 6 452 2215 ARCN1,PHLDB1,TREH,IFT46
SE_01_007300269 chr11:118591708-118641293 Sample_01_0073 Coronary artery coronary-artery 269 8 1250 80 7 470 2372 ARCN1,PHLDB1,TREH,IFT46
SE_01_006900434 chr11:118591834-118644181 Sample_01_0069 Adrenal gland adrenal-gland 434 8 1326 83 7 498 2777 ARCN1,PHLDB1,TREH,IFT46
SE_01_005600667 chr11:118591858-118634798 Sample_01_0056 Bone osteoblast 667 7 1084 66 5 427 1992 ARCN1,PHLDB1,TREH,IFT46
SE_01_008300729 chr11:118591902-118636087 Sample_01_0083 Sigmoid colon sigmoid-colon 729 5 1115 67 6 452 2215 ARCN1,PHLDB1,TREH,IFT46
SE_01_009200228 chr11:118591902-118639168 Sample_01_0092 Vagina vagina 228 12 1189 72 6 457 2321 ARCN1,PHLDB1,TREH,IFT46
SE_01_007700657 chr11:118592815-118636270 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 657 5 1088 67 6 449 2185 ARCN1,PHLDB1,TREH,IFT46
SE_02_014000498 chr11:118593178-118622347 Sample_02_0140 Kidney RT242 498 6 737 40 4 241 1068 ARCN1,PHLDB1,IFT46
SE_02_031200521 chr11:118594876-118643612 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 521 6 1208 77 7 476 2543 ARCN1,PHLDB1,TREH,IFT46
SE_02_017100157 chr11:118595029-118638825 Sample_02_0171 Lung IMR-90_proliferating 157 7 1075 66 6 441 2137 ARCN1,PHLDB1,TREH,IFT46
SE_02_034100298 chr11:118595039-118642932 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 298 6 1185 75 7 473 2543 ARCN1,PHLDB1,TREH,IFT46
SE_01_009100341 chr11:118595046-118635979 Sample_01_0091 Uterus uterus 341 5 1010 63 5 437 2115 ARCN1,PHLDB1,TREH,IFT46
SE_02_028400586 chr11:118595123-118660210 Sample_02_0284 Pelvis patient 119 586 9 1670 112 9 586 4242 ARCN1,PHLDB1,TREH,IFT46
SE_01_007200264 chr11:118595202-118659959 Sample_01_0072 Breast epithelium breast-epithelium 264 14 1658 110 9 585 4200 ARCN1,PHLDB1,TREH,IFT46
SE_02_029700502 chr11:118595238-118642558 Sample_02_0297 Neuroblastoma CLB-CAR 502 5 1171 75 7 471 2532 ARCN1,PHLDB1,TREH,IFT46
SE_02_024300353 chr11:118601332-118624012 Sample_02_0243 Foreskin foreskin_HFFs 353 4 555 29 4 237 838 ARCN1,PHLDB1,IFT46
SE_02_026100344 chr11:118601813-118635358 Sample_02_0261 Osteoblastic hFOB_differentiated 344 3 822 52 5 399 1833 ARCN1,PHLDB1,TREH,IFT46
SE_01_008501294 chr11:118603368-118636093 Sample_01_0085 Stomach stomach 1294 3 798 50 6 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_01_003701239 chr11:118603712-118635769 Sample_01_0037 Liver hepatocyte 1239 3 772 50 5 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_01_006600210 chr11:118603742-118624041 Sample_01_0066 Smooth muscle smooth-muscle-cell 210 4 482 24 4 213 650 PHLDB1,ARCN1,IFT46
SE_01_001800375 chr11:118603758-118637207 Sample_01_0018 Submandibular Salivary Gland ACC112 375 6 804 53 6 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_02_026200332 chr11:118603777-118623917 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 332 2 479 24 4 213 650 PHLDB1,ARCN1,IFT46
SE_02_026300417 chr11:118603851-118623988 Sample_02_0263 Osteoblastic hFOB_undifferentiated 417 3 477 24 4 213 650 PHLDB1,ARCN1,IFT46
SE_00_002300926 chr11:118603969-118607515 Sample_00_0023 Embryo mesenchymal-stem-cell 926 1 105 6 1 25 118 PHLDB1,ARCN1,IFT46
SE_01_007500652 chr11:118604038-118636037 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 652 5 761 49 6 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_02_004000387 chr11:118604119-118635947 Sample_02_0040 Embryo PFG 387 7 756 49 5 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_02_024400508 chr11:118604141-118623533 Sample_02_0244 Foreskin foreskin_D11 508 2 454 23 4 213 650 PHLDB1,ARCN1,IFT46
SE_02_030500585 chr11:118604152-118624614 Sample_02_0305 Neuroblastoma SH-EP 585 4 476 25 4 214 650 PHLDB1,ARCN1,IFT46
SE_02_021001051 chr11:118604257-118623610 Sample_02_0210 Lung MRC-5_N_1DPT 1051 3 453 23 4 213 650 PHLDB1,ARCN1,IFT46
SE_02_005500150 chr11:118604346-118635040 Sample_02_0055 Lung IMR-90_Nutlin-3a 150 5 725 48 5 374 1602 PHLDB1,ARCN1,TREH,IFT46
SE_01_009000350 chr11:118604346-118635972 Sample_01_0090 Lung upper-lobe-of-left-lung 350 3 753 49 5 384 1753 PHLDB1,ARCN1,TREH,IFT46
SE_02_011000493 chr11:118604367-118635026 Sample_02_0110 Ovaries IOE11 493 4 724 48 5 373 1598 PHLDB1,ARCN1,TREH,IFT46
SE_02_006900506 chr11:118604368-118611726 Sample_02_0069 Brain SF268 506 1 180 8 2 66 272 PHLDB1,ARCN1,IFT46
SE_02_005400167 chr11:118604370-118635608 Sample_02_0054 Lung IMR-90_DMSO_1 167 5 739 48 5 384 1742 PHLDB1,ARCN1,TREH,IFT46
SE_02_039700354 chr11:118604399-118623697 Sample_02_0397 Mammary gland CAL51-MCF-7 354 5 450 22 4 213 650 PHLDB1,ARCN1,IFT46
SE_02_026500810 chr11:118604425-118635106 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 810 4 726 47 5 375 1623 PHLDB1,ARCN1,TREH,IFT46
SE_02_021100541 chr11:118604439-118623795 Sample_02_0211 Lung MRC-5_NFD_1DPT 541 4 449 22 4 213 650 PHLDB1,ARCN1,IFT46
SE_02_020900560 chr11:118604448-118634949 Sample_02_0209 Lung MRC-5_MRC5_1DPT 560 6 720 47 5 366 1585 PHLDB1,ARCN1,TREH,IFT46
SE_02_010700625 chr11:118606951-118624252 Sample_02_0107 Endometrium EEC16 625 2 388 21 3 195 564 PHLDB1,ARCN1,IFT46
SE_02_018100219 chr11:118606984-118623792 Sample_02_0181 melanoma COLO679 219 3 378 20 3 195 564 PHLDB1,ARCN1,IFT46
SE_02_027400314 chr11:118607090-118624053 Sample_02_0274 Endometriosis hTERT_KD 314 3 377 19 3 195 564 PHLDB1,ARCN1,IFT46
SE_02_011100351 chr11:118607228-118624247 Sample_02_0111 Ovaries IOE4 351 3 379 20 3 195 564 PHLDB1,ARCN1,IFT46
SE_02_036700578 chr11:118607244-118644711 Sample_02_0367 Skeletal muscle NS129 578 9 895 60 6 417 2331 PHLDB1,ARCN1,TREH,IFT46
SE_02_039600669 chr11:118607322-118663792 Sample_02_0396 Skin NHEK-D 669 16 1435 97 9 536 4365 PHLDB1,TREH,ARCN1,IFT46
SE_02_005600207 chr11:118607349-118635766 Sample_02_0056 Mammary gland HMEC 207 6 657 44 4 364 1667 PHLDB1,ARCN1,TREH,IFT46
SE_02_035600110 chr11:118607405-118635490 Sample_02_0356 Colon Sw480 110 7 649 43 4 360 1629 PHLDB1,ARCN1,TREH,IFT46
SE_02_002700254 chr11:118607410-118624016 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 254 2 367 18 3 191 560 PHLDB1,ARCN1,IFT46
SE_02_017500226 chr11:118607461-118634929 Sample_02_0175 Lung IMR-90_Etoposide 226 6 634 43 4 341 1466 PHLDB1,ARCN1,TREH,IFT46
SE_01_002900307 chr11:118607486-118623724 Sample_01_0029 Lung fibroblast-of-lung 307 2 361 18 3 189 537 PHLDB1,ARCN1,IFT46
SE_02_005000234 chr11:118607522-118622802 Sample_02_0050 Skin BJ 234 6 339 18 3 163 519 PHLDB1,ARCN1,IFT46
SE_02_006800243 chr11:118607525-118623877 Sample_02_0068 Skin A375_DMSO 243 4 362 18 3 188 516 PHLDB1,ARCN1,IFT46
SE_02_035000658 chr11:118607533-118611646 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 658 1 90 3 1 41 136 PHLDB1,ARCN1,IFT46
SE_01_001900566 chr11:118607536-118623997 Sample_01_0019 Brain and spinal cord astrocyte 566 2 365 18 3 188 513 PHLDB1,ARCN1,IFT46
SE_00_002900441 chr11:118607542-118610777 Sample_00_0029 Ovary ovary 441 1 74 3 1 33 130 PHLDB1,ARCN1,IFT46
SE_02_031600333 chr11:118607545-118635517 Sample_02_0316 Neuroblastoma CHP212 333 3 648 43 4 359 1583 PHLDB1,ARCN1,TREH,IFT46
SE_01_006100202 chr11:118607572-118643000 Sample_01_0061 Prostate RWPE1 202 10 838 56 6 393 2036 PHLDB1,ARCN1,TREH,IFT46
SE_02_036100277 chr11:118607575-118636235 Sample_02_0361 Colon HT29_DMSO 277 5 665 44 5 357 1608 PHLDB1,ARCN1,TREH,IFT46
SE_02_035300203 chr11:118607604-118635613 Sample_02_0353 Colon HT29 203 5 648 43 4 357 1590 PHLDB1,ARCN1,TREH,IFT46
SE_02_017400074 chr11:118608678-118619709 Sample_02_0174 Lung IMR-90_DMSO_2 74 3 239 12 3 87 378 PHLDB1,ARCN1,IFT46
SE_02_008900487 chr11:118608853-118623750 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 487 4 327 17 3 160 378 PHLDB1,ARCN1,IFT46
SE_02_035800533 chr11:118609287-118631696 Sample_02_0358 Colon LS180 533 4 529 37 3 263 1101 PHLDB1,ARCN1,TREH,IFT46
SE_02_041300098 chr11:118609529-118636382 Sample_02_0413 Brain GBM_2493 98 4 619 44 4 331 1481 PHLDB1,ARCN1,TREH,IFT46
SE_02_022900295 chr11:118610810-118623441 Sample_02_0229 Umbilical cord ID01 295 9 279 15 2 152 378 PHLDB1,ARCN1,IFT46
SE_01_002600862 chr11:118611091-118621349 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 862 3 224 12 2 89 378 PHLDB1,ARCN1,IFT46
SE_02_018000539 chr11:118612235-118623713 Sample_02_0180 melanoma CJM 539 2 265 14 2 145 378 PHLDB1,ARCN1,IFT46
SE_02_008800549 chr11:118612307-118623772 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 549 4 264 14 2 145 378 PHLDB1,ARCN1,IFT46
SE_02_006900019 chr11:118612329-118626433 Sample_02_0069 Brain SF268 19 1 325 19 2 166 496 PHLDB1,ARCN1,IFT46
SE_02_042300526 chr11:118612505-118625990 Sample_02_0423 Skin A375 526 6 318 19 2 164 496 PHLDB1,ARCN1,IFT46
SE_02_042800753 chr11:118614301-118624444 Sample_02_0428 Kidney 12364284_VHL- 753 5 232 13 2 130 203 PHLDB1,ARCN1,IFT46
SE_02_035900809 chr11:118616522-118624003 Sample_02_0359 Colon Colo741 809 1 175 9 1 108 0 PHLDB1,ARCN1
SE_00_002300261 chr11:118616928-118624092 Sample_00_0023 Embryo mesenchymal-stem-cell 261 1 166 9 1 107 0 PHLDB1,ARCN1
SE_00_001500346 chr11:118617017-118623971 Sample_00_0015 Lung IMR-90 346 1 161 7 1 107 0 PHLDB1,ARCN1
SE_02_036800538 chr11:118617021-118644714 Sample_02_0368 Skeletal muscle NS134 538 6 686 48 4 329 1769 PHLDB1,ARCN1,TREH
SE_02_018501025 chr11:118617039-118622729 Sample_02_0185 Skin UACC257 1025 1 134 7 1 80 0 PHLDB1,ARCN1
SE_02_040500358 chr11:118617094-118623809 Sample_02_0405 Mammary gland ZR-75-30_KO 358 4 157 7 1 106 0 PHLDB1,ARCN1
SE_00_001000849 chr11:118617141-118623657 Sample_00_0010 Embryo endodermal-cell 849 2 155 7 1 104 0 PHLDB1,ARCN1
SE_02_040600290 chr11:118617202-118623637 Sample_02_0406 Mammary gland ZR-75-30_parental 290 5 155 7 1 104 0 PHLDB1,ARCN1
SE_02_009100476 chr11:118617313-118623939 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 476 3 157 7 1 104 0 PHLDB1,ARCN1
SE_02_021600341 chr11:118617596-118658784 Sample_02_0216 Skin NHEK_scramble 341 10 1052 77 6 409 2910 PHLDB1,TREH,ARCN1
SE_02_023000242 chr11:118617680-118623209 Sample_02_0230 Umbilical cord ID60 242 6 130 7 1 94 0 PHLDB1,ARCN1
SE_02_037500409 chr11:118618023-118635708 Sample_02_0375 Skeletal muscle RMS216 409 5 433 33 2 275 1101 PHLDB1,ARCN1,TREH
SE_02_037200403 chr11:118618055-118635675 Sample_02_0372 Skeletal muscle RMS008 403 3 431 32 2 275 1099 PHLDB1,ARCN1,TREH
SE_02_021500342 chr11:118619196-118631236 Sample_02_0215 Skin NHEK_siGRHL3 342 4 304 24 0 169 632 PHLDB1,ARCN1,TREH
SE_02_001700844 chr11:118620333-118636413 Sample_02_0017 Embryo H9_ESC 844 2 390 31 2 246 1103 PHLDB1,ARCN1,TREH
SE_02_007100028 chr11:118620440-118642697 Sample_02_0071 Lung GLC16_DMSO 28 4 539 42 3 280 1531 PHLDB1,ARCN1,TREH
Genomic distribution of SEs associated with PHLDB1
Genome Browser

The strength of the tissue affected by the gene

Expression of PHLDB1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)