SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000174827
Gene: PDZK1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:145670852-145708148 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_075200293 chr1:145655516-145709490 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 293 11 220 83 7 105 902 PDZK1,GPR89A,CD160,NBPF25P
SE_02_075500892 chr1:145669923-145709401 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 892 5 178 67 7 81 794 PDZK1,GPR89A,CD160
SE_02_074000426 chr1:145672749-145698372 Sample_02_0740 Muscle RH3 426 8 93 30 0 47 561 PDZK1,CD160
SE_02_136000337 chr1:145675059-145721560 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 337 17 218 81 13 87 582 PDZK1,CD160
SE_02_136200287 chr1:145675649-145721788 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 287 23 220 82 13 87 582 PDZK1,CD160
SE_02_098900764 chr1:145675752-145731283 Sample_02_0989 Kidney kidney cortex_WT 764 14 272 110 21 99 821 PDZK1,CD160
SE_02_136100326 chr1:145675911-145721786 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 326 16 220 82 13 87 582 PDZK1,CD160
SE_02_146500203 chr1:145679734-145721847 Sample_02_1465 Ovary CAOV4cis 203 8 209 79 13 79 518 PDZK1,CD160
SE_02_123400241 chr1:145684932-145722039 Sample_02_1234 Mammary gland T47D_Full 241 10 201 77 14 76 384 PDZK1,CD160
SE_02_076600417 chr1:145689995-145721862 Sample_02_0766 Ovary PEO1 417 13 169 70 13 54 195 PDZK1,CD160
SE_00_005300268 chr1:145690586-145718572 Sample_00_0053 Embryo trophoblast cell originated from H1 268 12 155 67 12 48 132 PDZK1,CD160
SE_02_077501759 chr1:145692507-145714508 Sample_02_0775 Pancreas EndoC-BH1_SE 1759 10 131 55 10 41 75 PDZK1,CD160,GPR89C
SE_02_020900740 chr1:145716280-145753731 Sample_02_0209 Lung MRC-5_MRC5_1DPT 740 9 188 85 22 79 957 CD160,RNF115,PDZK1
SE_02_049900687 chr1:145717150-145754014 Sample_02_0499 Fetal lung IMR90 IR Senescence 687 15 185 82 21 79 957 RNF115,CD160,PDZK1,ITGA10,POLR3C
SE_02_050000860 chr1:145720792-145753860 Sample_02_0500 Fetal lung IMR90_#2 860 11 165 74 19 73 894 RNF115,CD160,PDZK1,ITGA10,POLR3C
SE_02_127500528 chr1:145735452-145759322 Sample_02_1275 Prostate PC3_Vorinostat 528 21 119 49 9 59 655 RNF115,CD160,PDZK1
SE_02_127200573 chr1:145735937-145752625 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 573 9 84 34 7 54 596 RNF115,CD160,PDZK1
SE_01_004200440 chr1:145745279-145750378 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 440 1 20 13 2 22 140 RNF115,PDZK1,CD160
Genomic distribution of SEs associated with PDZK1
Genome Browser

The strength of the tissue affected by the gene

Expression of PDZK1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)