SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000255185
Gene: PDXDC2P Gene type: transcribed_unprocessed_pseudogene
Strand: - External links:
Genomic region: chr16:70010751-70065945 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_001700058 chr16:70075896-70096255 Sample_01_0017 Muscle A673 58 6 505 74 0 14 0 MIR1972-1,PDPR,PDXDC2P
SE_01_006400438 chr16:70079045-70097418 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 438 8 437 63 0 12 0 MIR1972-1,PDPR,PDXDC2P
SE_02_028400542 chr16:70080265-70116397 Sample_02_0284 Pelvis patient 119 542 9 870 114 0 35 337 PDPR,MIR1972-1,PDXDC2P
SE_02_023400880 chr16:70083724-70136793 Sample_02_0234 Tonsil Th17 880 11 1447 165 0 79 834 PDPR,CLEC18C,PDXDC2P
SE_02_103601026 chr16:70098802-70171085 Sample_02_1036 Mammary gland HCC70_XY018 1026 45 2224 216 1 141 2192 PDPR,LOC400541,CLEC18C,PDXDC2P
SE_02_103501661 chr16:70099219-70168925 Sample_02_1035 Mammary gland HCC70_Vehicle 1661 21 2170 214 1 141 2192 PDPR,LOC400541,CLEC18C,PDXDC2P
SE_02_104301283 chr16:70099284-70152192 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1283 13 1619 165 0 114 1364 PDPR,CLEC18C,PDXDC2P,LOC400541
SE_02_104701693 chr16:70099285-70134029 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1693 10 1001 110 0 68 770 PDPR,CLEC18C,PDXDC2P,LOC400541
SE_02_041800223 chr16:70107060-70119849 Sample_02_0418 Embryo H9_Null+EZH2 223 2 349 41 0 13 337 PDPR,PDXDC2P
SE_02_021600818 chr16:70108077-70127513 Sample_02_0216 Skin NHEK_scramble 818 5 591 70 0 32 477 PDPR,CLEC18C,PDXDC2P
SE_02_104801364 chr16:70110526-70128023 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1364 3 537 64 0 32 493 PDPR,CLEC18C,PDXDC2P,LOC400541
SE_00_000700489 chr16:70111072-70120043 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 489 1 252 31 0 13 337 PDPR,PDXDC2P
SE_02_036800494 chr16:70111129-70116932 Sample_02_0368 Skeletal muscle NS134 494 1 161 20 0 13 337 PDPR,PDXDC2P
SE_02_003200853 chr16:70113098-70117239 Sample_02_0032 Pancreas pancreatic-islets-M 853 1 114 16 0 12 337 PDPR,PDXDC2P
Genomic distribution of SEs associated with PDXDC2P
Genome Browser

The strength of the tissue affected by the gene

Expression of PDXDC2P

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)