Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000090857 |
| Gene: | PDPR | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr16:70114332-70162537 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_103600380 | chr16:69999387-70068408 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 380 | 30 | 1858 | 256 | 1 | 106 | 858 | PDXDC2P,MIR1972-2,CLEC18A,PDPR |
| SE_02_103500570 | chr16:70002137-70070478 |
Sample_02_1035 | Mammary gland | HCC70_Vehicle | 570 | 16 | 1824 | 248 | 1 | 106 | 858 | PDXDC2P,MIR1972-2,PDPR |
| SE_02_017200573 | chr16:70010303-70067350 |
Sample_02_0172 | Lung | IMR-90_quiescent | 573 | 8 | 1500 | 213 | 1 | 105 | 858 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_004700315 | chr16:70039845-70067404 |
Sample_02_0047 | Pancreatic endoderm | IIDP/donor790 | 315 | 5 | 659 | 97 | 0 | 39 | 260 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_077500830 | chr16:70050696-70069670 |
Sample_02_0775 | Pancreas | EndoC-BH1_SE | 830 | 13 | 426 | 56 | 0 | 29 | 162 | PDXDC2P,PDPR,CLEC18A |
| SE_02_012400337 | chr16:70052750-70071343 |
Sample_02_0124 | Embryo | Embryonic-stem-cells_Naive | 337 | 2 | 453 | 65 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_003601272 | chr16:70053012-70067117 |
Sample_00_0036 | Small intestine | small-intestine_108days | 1272 | 3 | 341 | 49 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_003200604 | chr16:70054220-70067266 |
Sample_02_0032 | Pancreas | pancreatic-islets-M | 604 | 4 | 312 | 44 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_008000479 | chr16:70056464-70067724 |
Sample_01_0080 | Prostate | prostate | 479 | 2 | 265 | 36 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_000200239 | chr16:70056665-70067752 |
Sample_02_0002 | Mammary gland | MCF-7_10Gygamma_2.5h | 239 | 2 | 262 | 33 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_003700572 | chr16:70056720-70067217 |
Sample_01_0037 | Liver | hepatocyte | 572 | 2 | 252 | 32 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_042400520 | chr16:70056733-70067772 |
Sample_02_0424 | Colon | SW620 | 520 | 2 | 262 | 33 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_017000408 | chr16:70056880-70071801 |
Sample_02_0170 | Prostate | LNCaP_R1881_DOX | 408 | 4 | 367 | 50 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_016900419 | chr16:70056888-70071720 |
Sample_02_0169 | Prostate | LNCaP_R1881 | 419 | 5 | 363 | 49 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_008501365 | chr16:70057026-70067224 |
Sample_01_0085 | Stomach | stomach | 1365 | 2 | 248 | 32 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_032200279 | chr16:70057495-70067783 |
Sample_02_0322 | Colon | Caco-2 | 279 | 2 | 250 | 32 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_021101402 | chr16:70057566-70066682 |
Sample_02_0211 | Lung | MRC-5_NFD_1DPT | 1402 | 2 | 227 | 27 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_004100838 | chr16:70057620-70066697 |
Sample_00_0041 | Stomach | stomach_3y | 838 | 5 | 226 | 27 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_007900831 | chr16:70057690-70067021 |
Sample_01_0079 | Peyers patch | Peyers-patch | 831 | 2 | 228 | 26 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_007100569 | chr16:70057696-70066688 |
Sample_01_0071 | Pancreas | body-of-pancreas | 569 | 3 | 222 | 26 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_001100998 | chr16:70057829-70067316 |
Sample_00_0011 | Esophagus | esophagus | 998 | 2 | 229 | 29 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_002001519 | chr16:70057911-70067408 |
Sample_00_0020 | Large intestine | large-intestine_108d | 1519 | 2 | 229 | 29 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_023700757 | chr16:70058721-70067304 |
Sample_02_0237 | Colon | V389 | 757 | 2 | 210 | 27 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_032601122 | chr16:70058850-70067664 |
Sample_02_0326 | Liver | hepatocytes_d3 | 1122 | 2 | 214 | 26 | 0 | 29 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_003500724 | chr16:70058902-70066657 |
Sample_00_0035 | Sigmoid colon | sigmoid-colon | 724 | 5 | 196 | 22 | 0 | 27 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_001500732 | chr16:70060212-70067112 |
Sample_02_0015 | Liver | HepG2_shNS | 732 | 2 | 180 | 24 | 0 | 25 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_024600171 | chr16:70061385-70067528 |
Sample_02_0246 | Mammary gland | MCF-7_estradiol | 171 | 2 | 151 | 21 | 0 | 23 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_040400250 | chr16:70061483-70067634 |
Sample_02_0404 | Mammary gland | ZR-75-1_2 | 250 | 2 | 149 | 21 | 0 | 23 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_004200735 | chr16:70061548-70070254 |
Sample_00_0042 | Stomach | stomach_30y | 735 | 3 | 207 | 25 | 0 | 23 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_005701120 | chr16:70063636-70067692 |
Sample_02_0057 | Mammary gland | vHMEC | 1120 | 1 | 97 | 13 | 0 | 22 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_005600812 | chr16:70063681-70067461 |
Sample_02_0056 | Mammary gland | HMEC | 812 | 1 | 90 | 12 | 0 | 22 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_035500440 | chr16:70063691-70067362 |
Sample_02_0355 | Colon | HCT15 | 440 | 1 | 88 | 12 | 0 | 21 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_02_029300426 | chr16:70063766-70067331 |
Sample_02_0293 | Pancreatic | L3-6_4SC-202 | 426 | 1 | 88 | 12 | 0 | 19 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_00_000100102 | chr16:70064910-70066479 |
Sample_00_0001 | Adipose | adipose-tissue | 102 | 2 | 43 | 3 | 0 | 14 | 162 | PDXDC2P,MIR1972-1,PDPR |
| SE_01_001700058 | chr16:70075896-70096255 |
Sample_01_0017 | Muscle | A673 | 58 | 6 | 505 | 74 | 0 | 14 | 0 | MIR1972-1,PDPR,PDXDC2P |
| SE_01_006400438 | chr16:70079045-70097418 |
Sample_01_0064 | Brain: derived from metastatic site: supra-orbital area | SK-N-MC | 438 | 8 | 437 | 63 | 0 | 12 | 0 | MIR1972-1,PDPR,PDXDC2P |
| SE_02_138400471 | chr16:70162334-70205331 |
Sample_02_1384 | Other | induced pluripotent stem cell derived Neuronal progenitor cell | 471 | 8 | 792 | 57 | 0 | 68 | 1570 | LOC400541,CLEC18C,PDPR,EXOSC6,SMG1P7 |
Genomic distribution of SEs associated with PDPR