SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000133256
Gene: PDE6B Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:625573-670782 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138400848 chr4:623551-650602 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 848 6 1003 124 0 35 368 PDE6B,ATP5I,MYL5,MFSD7
SE_02_077900170 chr4:672695-681540 Sample_02_0779 Lymphoma U2932 170 1 353 14 0 12 1432 MYL5,ATP5I,PDE6B,MFSD7,PCGF3
SE_02_102900908 chr4:672859-681498 Sample_02_1029 Colon HCT116 908 1 344 14 0 12 1432 MYL5,ATP5I,PDE6B,MFSD7,PCGF3
SE_02_039600957 chr4:673310-681665 Sample_02_0396 Skin NHEK-D 957 1 322 13 0 12 1402 MYL5,ATP5I,PDE6B,PCGF3,MFSD7
SE_02_130400663 chr4:674460-703981 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 663 10 1180 57 2 51 2498 MFSD7,MYL5,ATP5I,PDE6B,PCGF3
SE_01_006900490 chr4:680061-728899 Sample_01_0069 Adrenal gland adrenal-gland 490 8 1861 141 3 62 1810 MYL5,MFSD7,PCGF3,PDE6B,ATP5I
SE_02_101701019 chr4:680189-730315 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1019 10 1900 144 3 63 1786 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_01_002200279 chr4:680594-694326 Sample_01_0022 Prostate C4-2B 279 4 564 25 0 46 1520 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_101601034 chr4:680774-708065 Sample_02_1016 Embryo H9_Mesendoderm_24h 1034 5 1089 67 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_081000033 chr4:680807-708115 Sample_02_0810 Mammary gland T47D noSerum 33 7 1092 69 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_119900645 chr4:680843-708071 Sample_02_1199 Brain GBM35 645 4 1087 67 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_143200445 chr4:680852-730453 Sample_02_1432 Bone A673 STAG2 WT 445 23 1874 144 3 63 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_016800367 chr4:680891-696065 Sample_02_0168 Prostate LNCaP 367 3 617 29 0 46 1474 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_067300368 chr4:680955-695792 Sample_02_0673 Prostate LNCAP_FA 368 5 604 27 0 46 1451 MFSD7,MYL5,PDE6B,ATP5I,PCGF3
SE_02_103601878 chr4:680964-700125 Sample_02_1036 Mammary gland HCC70_XY018 1878 7 757 37 1 46 1446 MFSD7,MYL5,PDE6B,ATP5I,PCGF3
SE_02_143300179 chr4:680971-775541 Sample_02_1433 Bone A673 STAG2 null 179 39 3847 344 7 148 3167 MFSD7,MYL5,PCGF3,PDE6B,ATP5I,LOC100129917
SE_02_146400254 chr4:681001-708334 Sample_02_1464 Ovary CAOV4 254 9 1091 69 2 62 1629 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_103500319 chr4:681042-747761 Sample_02_1035 Mammary gland HCC70_Vehicle 319 23 2501 212 5 88 2429 MFSD7,MYL5,PCGF3,PDE6B,ATP5I,LOC100129917
SE_02_081601580 chr4:681049-707849 Sample_02_0816 Ovary Clear cell ovarian cancer 1580 5 1073 67 2 62 1618 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_080900116 chr4:681110-708033 Sample_02_0809 Mammary gland T47D Serum 116 6 1077 67 2 62 1605 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_082601694 chr4:681199-709274 Sample_02_0826 Stomach gastric tumor 1694 9 1116 73 2 62 1571 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_129900395 chr4:683731-708427 Sample_02_1299 Liver liver 395 5 969 68 2 42 964 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_129700473 chr4:683791-707821 Sample_02_1297 Lung lung 473 5 949 65 2 42 946 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_037600294 chr4:684174-698255 Sample_02_0376 Skeletal muscle RMS237 294 3 551 29 1 26 727 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_080800673 chr4:684228-719251 Sample_02_0808 Ovary RMG1_ARID1A KO 673 17 1294 103 3 42 915 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_061300572 chr4:686597-726476 Sample_02_0613 Liposarcoma MLPS_T1 572 9 1486 123 3 30 442 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_146000925 chr4:686656-707840 Sample_02_1460 Blood Mutz-3 925 3 815 61 2 28 434 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_016300347 chr4:686687-694172 Sample_02_0163 Prostate C4-2B_SR2211_24h 347 3 284 18 0 12 238 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_108700362 chr4:686808-708154 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 362 8 821 63 2 28 393 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_108600334 chr4:686843-707958 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 334 5 810 61 2 28 387 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_109300493 chr4:686866-708047 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 493 7 809 61 2 28 374 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_104700089 chr4:698021-805095 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 89 60 4257 484 7 150 2892 CPLX1,LOC100129917,PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_062200463 chr4:698683-730562 Sample_02_0622 Blood EOL1_Naive 463 14 1167 112 2 17 206 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_065700592 chr4:699127-708160 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 592 2 369 37 1 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_064501453 chr4:699128-708100 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1453 2 364 36 1 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_122500398 chr4:699340-726761 Sample_02_1225 Bone marrow RAJI 398 6 1028 98 2 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_147900246 chr4:699461-730241 Sample_02_1479 Bone EW-7 246 12 1133 110 2 17 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_104900196 chr4:699793-795918 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 196 60 3909 451 6 150 2892 CPLX1,LOC100129917,PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_039601823 chr4:703070-707716 Sample_02_0396 Skin NHEK-D 1823 1 176 23 0 16 188 PCGF3,PDE6B,MYL5,MFSD7,ATP5I
Genomic distribution of SEs associated with PDE6B
Genome Browser

The strength of the tissue affected by the gene

Expression of PDE6B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)