SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000106244
Gene: PDAP1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:99392048-99408597 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_035900124 chr7:99355319-99382688 Sample_02_0359 Colon Colo741 124 3 700 88 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_018300127 chr7:99355652-99382408 Sample_02_0183 Skin SKMEL2 127 7 688 88 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_149300294 chr7:99355771-99381910 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 294 5 674 88 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_018500287 chr7:99355811-99382209 Sample_02_0185 Skin UACC257 287 5 679 88 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_018100196 chr7:99355811-99382214 Sample_02_0181 melanoma COLO679 196 6 679 88 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_155100545 chr7:99355920-99382178 Sample_02_1551 Gastrointestinal Stromal MaMel 545 5 678 86 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_018400378 chr7:99356969-99382153 Sample_02_0184 Skin SKMEL30 378 5 646 80 1 40 437 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_094200261 chr7:99357254-99363814 Sample_02_0942 Brain LN229 261 5 169 10 1 13 174 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_086900658 chr7:99361155-99385701 Sample_02_0869 Fibroblast VH10_NO_UV 658 18 620 79 0 28 353 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_092900527 chr7:99361460-99393398 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 527 18 858 100 0 78 1036 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_136600864 chr7:99362556-99393660 Sample_02_1366 Pancreas BxPC3-untreated 864 12 842 101 0 78 1036 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_093000764 chr7:99362568-99384453 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 764 15 548 77 0 27 308 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_064701101 chr7:99363138-99393084 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1101 5 806 97 0 78 1036 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_065201180 chr7:99363155-99380944 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1180 4 441 62 0 27 308 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_136500004 chr7:99365305-99393912 Sample_02_1365 Pancreas AsPC1-untreated 4 11 793 95 0 78 997 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_012400664 chr7:99365414-99380503 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 664 2 392 57 0 27 259 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_070500076 chr7:99365755-99393691 Sample_02_0705 Pancreas AsPC1 WT 76 6 775 93 0 78 966 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_072400038 chr7:99365822-99393426 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 38 6 762 90 0 78 949 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_02_147000280 chr7:99365853-99381213 Sample_02_1470 Umbilical Vein H441 280 5 396 58 0 27 218 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_105400920 chr7:99365915-99381939 Sample_02_1054 Esophagus SKGT4 920 7 424 62 0 27 205 ARPC1A,ARPC1B,BUD31,PDAP1
SE_02_125800818 chr7:99365936-99394081 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 818 4 785 93 0 85 976 ARPC1A,ARPC1B,BUD31,PTCD1,PDAP1,CPSF4
SE_01_009000899 chr7:99368341-99394329 Sample_01_0090 Lung upper-lobe-of-left-lung 899 4 739 89 0 82 1001 ARPC1B,CPSF4,PDAP1,ARPC1A,BUD31,PTCD1
SE_01_010400521 chr7:99368438-99393826 Sample_01_0104 Lung upper lobe of left lung 521 7 721 88 0 72 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4,ATP5J2-PTCD1,ZKSCAN5,ZNF655,ZSCAN25,SMURF1,ZNF789
SE_02_155300649 chr7:99368637-99394479 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 649 10 740 88 0 84 1031 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_093500588 chr7:99369080-99393500 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 588 7 691 80 0 72 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_081601101 chr7:99369615-99393538 Sample_02_0816 Ovary Clear cell ovarian cancer 1101 4 678 80 0 72 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_046100659 chr7:99369815-99386686 Sample_02_0461 Blood MV-4-11-B cells 659 4 453 61 0 26 318 ARPC1B,ARPC1A,BUD31,PDAP1
SE_02_070900798 chr7:99371922-99393489 Sample_02_0709 Pancreas hT85_organoid 798 5 623 77 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_103900399 chr7:99372185-99385836 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 399 3 368 56 0 25 240 ARPC1B,ARPC1A,BUD31,PDAP1
SE_02_157900616 chr7:99372202-99385924 Sample_02_1579 Renal 786-M1A 616 5 369 56 0 25 266 ARPC1B,ARPC1A,BUD31,PDAP1
SE_00_005600654 chr7:99372388-99393845 Sample_00_0056 Sigmoid colon sigmoid colon 3y 654 9 623 79 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_112900754 chr7:99372452-99393541 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 754 5 612 75 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4,ZKSCAN5,SMURF1
SE_00_005500501 chr7:99372508-99393697 Sample_00_0055 Spleen spleen 34y 501 5 617 77 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_064501769 chr7:99372667-99393175 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1769 5 591 73 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_085200553 chr7:99373137-99393251 Sample_02_0852 Mammary gland MCF7L-P 553 6 585 71 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_115900554 chr7:99373137-99393251 Sample_02_1159 Mammary gland MCF7 554 6 585 71 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_032100686 chr7:99373677-99382635 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 686 1 240 37 0 20 160 ARPC1B,BUD31,PDAP1,ARPC1A
SE_02_075000366 chr7:99373687-99385972 Sample_02_0750 Lymphoma Rec-1_GSI 366 4 326 44 0 25 284 ARPC1B,ARPC1A,BUD31,PDAP1
SE_00_000600650 chr7:99373753-99382317 Sample_00_0006 Blood CD14-positive-monocyte 650 1 228 32 0 20 160 ARPC1B,BUD31,PDAP1,ARPC1A
SE_02_078200454 chr7:99373816-99393470 Sample_02_0782 Blood MEC1 454 4 557 60 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_061701118 chr7:99373822-99393803 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1118 4 571 63 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_078300697 chr7:99373848-99383239 Sample_02_0783 Blood MEC2 697 3 249 34 0 20 160 ARPC1B,ARPC1A,BUD31,PDAP1
SE_02_012000266 chr7:99373859-99382308 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 266 1 225 32 0 20 160 ARPC1B,BUD31,PDAP1,ARPC1A
SE_02_075100227 chr7:99373860-99387054 Sample_02_0751 Lymphoma Rec-1_WO 227 3 350 43 0 38 384 ARPC1B,ARPC1A,BUD31,PDAP1
SE_02_011800290 chr7:99373892-99393387 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 290 2 549 60 0 71 888 ARPC1B,CPSF4,PDAP1,ARPC1A,BUD31,PTCD1
SE_02_135000654 chr7:99373939-99384062 Sample_02_1350 Leukophereses leukophereses_p456 654 4 265 37 0 20 160 ARPC1B,ARPC1A,BUD31,PDAP1
SE_02_059300156 chr7:99374059-99393904 Sample_02_0593 Fetal spleenocytes fetal naive T cells 156 5 568 62 0 71 898 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_147100788 chr7:99374081-99393493 Sample_02_1471 Blood Outgrowth Endothelia BOEC 788 5 553 59 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_059100267 chr7:99374088-99394098 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 267 6 573 62 0 80 936 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_00_004700224 chr7:99374153-99393812 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 224 7 562 61 0 71 888 ARPC1B,ARPC1A,BUD31,PTCD1,PDAP1,CPSF4
SE_02_104500461 chr7:99376598-99394473 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 461 7 529 54 0 70 871 ARPC1B,BUD31,PDAP1,CPSF4,PTCD1
SE_02_002300553 chr7:99376806-99393882 Sample_02_0023 Blood CD8donorC 553 7 505 52 0 59 734 ARPC1B,BUD31,PDAP1,CPSF4,PTCD1
SE_02_152000604 chr7:99378269-99384238 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 604 6 162 20 0 6 0 ARPC1B,BUD31,PDAP1
SE_00_000900857 chr7:99378665-99382438 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 857 1 108 14 0 6 0 ARPC1B,BUD31,PDAP1
SE_00_002700876 chr7:99378729-99382840 Sample_00_0027 Blood natural-killer-cell 876 1 117 14 0 6 0 ARPC1B,BUD31,PDAP1
SE_02_074501313 chr7:99379239-99394406 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1313 3 455 44 0 67 859 ARPC1B,BUD31,PDAP1,CPSF4,PTCD1
SE_02_059200564 chr7:99379360-99393680 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 564 4 430 43 0 57 728 ARPC1B,BUD31,PDAP1,CPSF4,PTCD1
SE_02_066300808 chr7:99419302-99433640 Sample_02_0663 Thyroid TT 808 4 490 44 4 57 883 BUD31,ATP5J2-PTCD1,PTCD1,ARPC1B,ZNF789,ATP5J2,PDAP1,CPSF4
SE_02_075300165 chr7:99420325-99440622 Sample_02_0753 Embryo ES-derived progenitors_FG type 165 4 639 54 5 60 1169 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ARPC1B,ZNF789,ATP5J2,PDAP1
SE_02_012400518 chr7:99421680-99445795 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 518 3 737 67 5 61 1236 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ARPC1B,PDAP1,BUD31,ZNF789
SE_02_033000663 chr7:99423082-99443099 Sample_02_0330 Endoderm MHG 663 4 598 59 5 60 1169 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ARPC1B,PDAP1,BUD31,ZNF789
SE_02_103501629 chr7:99425846-99445889 Sample_02_1035 Mammary gland HCC70_Vehicle 1629 10 580 56 4 34 866 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_075700534 chr7:99427180-99445334 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 534 6 526 50 4 34 866 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_032200338 chr7:99428389-99440817 Sample_02_0322 Colon Caco-2 338 1 370 29 4 33 799 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_076500087 chr7:99428904-99440655 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 87 1 350 28 3 33 799 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_004400287 chr7:99430948-99439858 Sample_02_0044 Embryo endodermal CyT49_ES_D5 287 3 268 21 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_003901191 chr7:99431082-99443181 Sample_02_0039 Embryo AFG 1191 4 345 29 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_152700578 chr7:99431144-99445336 Sample_02_1527 Embryo naive embryonic stem cell 578 3 416 35 2 18 663 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_077400152 chr7:99431389-99440043 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 152 3 261 21 2 17 596 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_01_000200106 chr7:99431431-99439754 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 106 2 256 21 2 17 589 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_01_000100098 chr7:99431504-99440174 Sample_01_0001 Prostate 22Rv1 98 2 260 21 2 17 596 ATP5J2-PTCD1,CPSF4,PTCD1,ATP5J2,ZNF789,PDAP1,BUD31
SE_02_077200248 chr7:99434087-99439543 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 248 5 164 12 1 12 446 CPSF4,PTCD1,ATP5J2-PTCD1,BUD31,ATP5J2,PDAP1,ZNF789
SE_02_133200600 chr7:99441092-99479139 Sample_02_1332 Blood Monomac6_CTRL 600 7 1083 87 11 80 1379 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_076500098 chr7:99451371-99476317 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 98 1 707 59 7 56 907 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_077500561 chr7:99455409-99489236 Sample_02_0775 Pancreas EndoC-BH1_SE 561 7 947 65 11 32 1280 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_02_104603035 chr7:99455842-99479101 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3035 4 651 47 8 30 844 CPSF4,ZNF789,ATP5J2-PTCD1,ATP5J2,BUD31,ZKSCAN5,PTCD1,PDAP1,ZNF394
SE_01_000200127 chr7:99456773-99474221 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 127 3 486 37 5 26 629 CPSF4,ATP5J2-PTCD1,ZNF789,ATP5J2,ZKSCAN5,PDAP1,ZNF394,BUD31,PTCD1
Genomic distribution of SEs associated with PDAP1
Genome Browser

The strength of the tissue affected by the gene

Expression of PDAP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)