SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000267107
Gene: PCAT19 Gene type: lncRNA
Strand: - External links:
Genomic region: chr19:41449520-41501223 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_058200579 chr19:41506027-41556224 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 579 12 1527 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_057700559 chr19:41506029-41556259 Sample_02_0577 Blood MOLM13_empty 559 7 1527 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_121900240 chr19:41506078-41556226 Sample_02_1219 Bone marrow H929 240 9 1524 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_122300930 chr19:41506085-41553708 Sample_02_1223 Bone marrow KMS28BM 930 13 1478 168 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_122700672 chr19:41506088-41570763 Sample_02_1227 Bone marrow U266 672 19 1908 237 3 0 219 LINC01480,CEACAM21,PCAT19
SE_02_057400787 chr19:41506102-41556088 Sample_02_0574 Blood MOLM-13_sgNeg2 787 16 1521 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_057500779 chr19:41506109-41555083 Sample_02_0575 Blood MOLM13_sgLKB1e2 779 12 1504 172 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_099300694 chr19:41506125-41556164 Sample_02_0993 Blood MOLM-13_empty 694 18 1520 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_099400474 chr19:41506134-41556126 Sample_02_0994 Blood MOLM13_SIK3TQ 474 21 1520 176 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_078300863 chr19:41520907-41555598 Sample_02_0783 Blood MEC2 863 10 959 110 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_078201094 chr19:41520915-41554990 Sample_02_0782 Blood MEC1 1094 9 951 109 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_099500544 chr19:41520978-41556203 Sample_02_0995 Blood MOLM-13_empty vector 544 18 968 113 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_109800822 chr19:41521065-41554311 Sample_02_1098 Blood THP1_DMSO_noPMA 822 8 932 107 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_075000811 chr19:41521171-41553816 Sample_02_0750 Lymphoma Rec-1_GSI 811 5 913 102 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_122000514 chr19:41521297-41556145 Sample_02_1220 Bone marrow JJN3 514 8 952 109 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_073900578 chr19:41521407-41556318 Sample_02_0739 Blood Nalm6 578 5 952 109 2 0 47 LINC01480,CEACAM21,PCAT19,ATP5SL,B3GNT8
SE_02_045400867 chr19:41521594-41563446 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 867 8 1126 134 3 0 47 LINC01480,CEACAM21,PCAT19
SE_02_045600605 chr19:41521606-41564107 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 605 9 1145 140 3 0 47 LINC01480,CEACAM21,PCAT19
SE_02_122100484 chr19:41521694-41555743 Sample_02_1221 Bone marrow KMS11 484 9 928 107 2 0 47 LINC01480,CEACAM21,PCAT19
SE_02_062200541 chr19:41521758-41556995 Sample_02_0622 Blood EOL1_Naive 541 11 949 109 2 0 47 LINC01480,CEACAM21,PCAT19,ATP5SL,HNRNPUL1
SE_02_104901491 chr19:41521906-41587831 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1491 22 1856 246 3 8 1011 LINC01480,CEACAM21,PCAT19,CEACAM4
SE_02_083600751 chr19:41527485-41563597 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 751 9 929 115 3 0 47 LINC01480,CEACAM21,PCAT19
SE_02_083400854 chr19:41527619-41563949 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 854 7 928 111 3 0 47 LINC01480,CEACAM21,PCAT19
SE_02_083700707 chr19:41527871-41563551 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 707 12 904 108 3 0 47 LINC01480,CEACAM21,PCAT19
SE_02_088500905 chr19:41530083-41556668 Sample_02_0885 Blood NALM6_2 905 4 664 70 2 0 47 LINC01480,CEACAM21,PCAT19,ATP5SL,B3GNT8
Genomic distribution of SEs associated with PCAT19
Genome Browser

The strength of the tissue affected by the gene

Expression of PCAT19

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)