SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000122375
Gene: OPN4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:86654547-86666848 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_155400331 chr10:86630051-86694470 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 331 17 2100 265 4 261 2581 LDB3,OPN4
SE_02_089200041 chr10:86630319-86754677 Sample_02_0892 Heart left ventricle_LV1215 41 46 3786 390 5 461 3976 LDB3,OPN4,BMPR1A
SE_02_088700045 chr10:86630323-86756440 Sample_02_0887 Heart left ventricle_LV1121 45 37 3850 394 5 478 3976 LDB3,OPN4,BMPR1A
SE_02_089600090 chr10:86630389-86712763 Sample_02_0896 Heart left ventricle_LV1294 90 27 2610 292 4 335 3096 LDB3,OPN4,BMPR1A
SE_02_090100088 chr10:86630391-86738380 Sample_02_0901 Heart left ventricle_LV1471 88 43 3310 343 5 422 3976 LDB3,OPN4,BMPR1A
SE_02_089800094 chr10:86630405-86734916 Sample_02_0898 Heart left ventricle_LV1356 94 36 3245 337 4 417 3860 LDB3,OPN4,BMPR1A
SE_02_114500095 chr10:86631329-86715385 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 95 39 2664 295 4 339 3096 LDB3,OPN4,BMPR1A
SE_02_053300411 chr10:86631743-86694090 Sample_02_0533 Blood vessel Circle of Willis_54y 411 27 2043 258 4 261 2581 LDB3,OPN4
SE_02_089700346 chr10:86631827-86690615 Sample_02_0897 Heart left ventricle_LV1325 346 15 1943 256 4 245 2379 LDB3,OPN4
SE_02_104600202 chr10:86631890-86733045 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 202 52 3154 329 4 400 3648 LDB3,OPN4,BMPR1A
SE_02_115100276 chr10:86632733-86716918 Sample_02_1151 Mammary gland MCF-7_UNTR 276 29 2690 290 4 355 3286 LDB3,OPN4,BMPR1A
SE_02_116200785 chr10:86642556-86684858 Sample_02_1162 Stomach YCC11 785 24 1454 189 4 216 2156 LDB3,OPN4
SE_01_009700138 chr10:86642618-86738357 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 138 29 2983 293 5 422 3976 LDB3,OPN4,BMPR1A
SE_02_153900501 chr10:86643356-86680459 Sample_02_1539 Nasopharyngeal C666-1 501 12 1255 160 4 179 1966 LDB3,OPN4
SE_02_089500055 chr10:86643742-86692990 Sample_02_0895 Heart left ventricle_LV1259 55 24 1691 207 4 252 2581 LDB3,OPN4
SE_00_005200048 chr10:86644668-86712647 Sample_00_0052 Heart left ventricle 3y 48 21 2220 234 4 332 3096 LDB3,OPN4,BMPR1A
SE_02_090000163 chr10:86644727-86712571 Sample_02_0900 Heart left ventricle_LV1452 163 26 2217 234 4 331 3096 LDB3,OPN4,BMPR1A
SE_02_089900255 chr10:86644806-86690574 Sample_02_0899 Heart left ventricle_LV1400 255 16 1583 202 4 239 2379 LDB3,OPN4
SE_02_077500707 chr10:86645882-86679070 Sample_02_0775 Pancreas EndoC-BH1_SE 707 13 1119 153 4 155 1751 LDB3,OPN4
SE_02_068700967 chr10:86646469-86674693 Sample_02_0687 Lung NCI-H146_no infection 967 9 979 137 3 145 1751 LDB3,OPN4
SE_02_144300106 chr10:86647038-86676498 Sample_02_1443 Lung H69M 106 6 1019 143 4 152 1751 LDB3,OPN4
SE_02_110600374 chr10:86648425-86692187 Sample_02_1106 Brain NGP 374 20 1531 195 3 240 2477 LDB3,OPN4
SE_02_089100052 chr10:86649090-86754848 Sample_02_0891 Heart left ventricle_LV1202 52 38 3281 321 4 453 3976 LDB3,OPN4,BMPR1A
SE_02_091800218 chr10:86649332-86685419 Sample_02_0918 Heart left ventricle_DCM_LV1437 218 13 1278 171 3 205 2156 LDB3,OPN4
SE_02_089300038 chr10:86649381-86734873 Sample_02_0893 Heart left ventricle_LV1226 38 29 2719 263 3 403 3854 LDB3,OPN4,BMPR1A
SE_02_091600298 chr10:86649436-86685318 Sample_02_0916 Heart left ventricle_DCM_LV1392 298 10 1273 171 3 204 2156 LDB3,OPN4
SE_02_090900050 chr10:86649478-86754785 Sample_02_0909 Heart left ventricle_DCM_LV1264 50 26 3261 317 4 448 3976 LDB3,OPN4,BMPR1A
SE_02_091100050 chr10:86649585-86735353 Sample_02_0911 Heart left ventricle_DCM_LV1290 50 32 2726 264 3 406 3888 LDB3,OPN4,BMPR1A
SE_00_004600009 chr10:86649589-86738185 Sample_00_0046 Heart right ventricle_34y 9 39 2776 269 4 409 3976 LDB3,OPN4,BMPR1A
SE_02_090600117 chr10:86649627-86712546 Sample_02_0906 Heart left ventricle_DCM_LV1072 117 21 2075 219 3 322 3096 LDB3,OPN4,BMPR1A
SE_02_110500782 chr10:86649676-86684362 Sample_02_1105 Brain NBL-S 782 10 1232 161 3 189 2156 LDB3,OPN4
SE_02_091000160 chr10:86656998-86712669 Sample_02_0910 Heart left ventricle_DCM_LV1275 160 17 1864 187 3 310 2857 LDB3,OPN4,BMPR1A
SE_02_091200199 chr10:86657883-86712633 Sample_02_0912 Heart left ventricle_DCM_LV1300 199 19 1818 185 3 310 2772 LDB3,OPN4,BMPR1A
SE_02_089000088 chr10:86657967-86712551 Sample_02_0890 Heart left ventricle_LV1200 88 21 1815 182 3 310 2761 LDB3,OPN4,BMPR1A
SE_02_117300153 chr10:86659075-86712656 Sample_02_1173 Brain GBM01 153 16 1770 180 3 305 2570 LDB3,OPN4,BMPR1A
SE_02_087400540 chr10:86659516-86681527 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 540 5 797 106 3 154 1411 LDB3,OPN4
SE_02_121300247 chr10:86660096-86692592 Sample_02_1213 Brain GBM31 247 13 1147 147 3 210 1818 LDB3,OPN4
SE_02_088900380 chr10:86660716-86677588 Sample_02_0889 Heart left ventricle_LV1183 380 1 603 95 3 121 890 LDB3,OPN4
SE_02_074600001 chr10:86660896-86754475 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1 41 2876 274 4 422 3100 LDB3,OPN4,BMPR1A
SE_02_092400020 chr10:86660933-86694545 Sample_02_0924 Heart fetal heart_PCW10_12569 20 1 1186 150 3 222 1705 LDB3,OPN4
SE_02_092300139 chr10:86660963-86678391 Sample_02_0923 Heart fetal heart_PCW10_12522 139 1 620 97 3 121 875 LDB3,OPN4
SE_02_120300307 chr10:86660976-86692840 Sample_02_1203 Brain NB1 307 6 1133 146 3 213 1705 LDB3,OPN4
SE_01_009800056 chr10:86661030-86738364 Sample_01_0098 Heart left ventricle_51y 56 17 2397 228 4 383 3100 LDB3,OPN4,BMPR1A
SE_02_046200172 chr10:86661045-86677789 Sample_02_0462 Lung NCI-H2171 cells 172 12 597 96 3 121 875 LDB3,OPN4
SE_02_092200046 chr10:86661052-86694694 Sample_02_0922 Heart fetal heart_PCW10_12434 46 1 1186 150 3 222 1705 LDB3,OPN4
SE_02_090400277 chr10:86661071-86676480 Sample_02_0904 Heart left ventricle_DCM_LV1028 277 1 563 89 3 119 875 LDB3,OPN4
SE_02_090500062 chr10:86661087-86758795 Sample_02_0905 Heart left ventricle_DCM_LV1033 62 20 2977 280 4 464 3298 BMPR1A,LDB3,OPN4
SE_02_090200161 chr10:86661116-86712629 Sample_02_0902 Heart left ventricle_LV1558 161 22 1693 177 3 296 2214 LDB3,OPN4,BMPR1A
SE_02_101300201 chr10:86661138-86684796 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 201 12 864 124 3 177 1270 LDB3,OPN4
SE_02_092500013 chr10:86661151-86759316 Sample_02_0925 Heart fetal heart_PCW17_12570 13 34 2988 282 4 464 3288 BMPR1A,LDB3,OPN4
SE_02_088800038 chr10:86661198-86759071 Sample_02_0888 Heart left ventricle_LV1160 38 36 2982 280 4 464 3276 BMPR1A,LDB3,OPN4
SE_02_074500015 chr10:86661244-86715408 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 15 18 1773 182 3 300 2185 LDB3,OPN4,BMPR1A
SE_02_091700176 chr10:86661258-86692665 Sample_02_0917 Heart left ventricle_DCM_LV1433 176 11 1121 146 3 213 1655 LDB3,OPN4
SE_02_092100025 chr10:86661259-86695570 Sample_02_0921 Heart embryonic heart_CS22 25 1 1198 151 3 224 1668 LDB3,OPN4
SE_02_090700070 chr10:86661262-86762103 Sample_02_0907 Heart left ventricle_DCM_LV1223 70 32 3061 284 4 464 3263 BMPR1A,LDB3,OPN4
SE_02_091900094 chr10:86661292-86712577 Sample_02_0919 Heart left ventricle_DCM_LV1532 94 18 1688 177 3 295 2180 LDB3,OPN4,BMPR1A
SE_02_092000112 chr10:86661300-86715558 Sample_02_0920 Heart left ventricle_DCM_LV1535 112 22 1772 183 3 299 2177 LDB3,OPN4,BMPR1A
SE_02_120400390 chr10:86661318-86685034 Sample_02_1204 Brain NB2 390 6 868 127 3 175 1234 LDB3,OPN4
SE_00_005700039 chr10:86661342-86692872 Sample_00_0057 Heart right ventricle 3y 39 25 1121 146 3 209 1656 LDB3,OPN4
SE_02_089400135 chr10:86661362-86691758 Sample_02_0894 Heart left ventricle_LV1248 135 13 1080 145 3 203 1454 LDB3,OPN4
SE_02_120500656 chr10:86661492-86684345 Sample_02_1205 Brain NB3 656 8 837 119 3 154 1191 LDB3,OPN4
SE_02_119600590 chr10:86661509-86685047 Sample_02_1196 Brain GBM32 590 14 863 127 3 168 1188 LDB3,OPN4
SE_02_100900147 chr10:86661756-86681560 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 147 13 724 102 3 141 1052 LDB3,OPN4
SE_02_091300537 chr10:86661818-86676213 Sample_02_0913 Heart left ventricle_DCM_LV1304 537 1 536 87 3 109 763 LDB3,OPN4
SE_01_009400229 chr10:86661826-86694281 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 229 1 1143 147 3 213 1593 LDB3,OPN4
SE_02_100000127 chr10:86661837-86681655 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 127 8 726 102 3 143 1086 LDB3,OPN4
SE_02_090300429 chr10:86661838-86676420 Sample_02_0903 Heart left ventricle_DCM_LV1009 429 1 539 87 3 110 763 LDB3,OPN4
SE_02_100800077 chr10:86661886-86684036 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 77 15 811 111 3 154 1168 LDB3,OPN4
SE_02_074700135 chr10:86661906-86676539 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 135 1 539 87 3 110 763 LDB3,OPN4
SE_02_091500475 chr10:86661954-86691720 Sample_02_0915 Heart left ventricle_DCM_LV1371 475 10 1063 143 3 198 1391 LDB3,OPN4
SE_02_100500097 chr10:86662225-86675014 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 97 9 487 79 2 105 719 LDB3,OPN4
SE_02_100400056 chr10:86663034-86675244 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 56 5 454 75 2 101 615 LDB3,OPN4
SE_02_091400604 chr10:86663212-86685333 Sample_02_0914 Heart left ventricle_DCM_LV1342 604 9 806 120 3 163 1020 LDB3,OPN4
SE_02_121100608 chr10:86663641-86684269 Sample_02_1211 Brain GBM21 608 8 754 107 3 147 981 LDB3,OPN4
SE_02_119800799 chr10:86663708-86681389 Sample_02_1198 Brain GBM34 799 8 640 94 3 124 804 LDB3,OPN4
SE_01_011500439 chr10:86663805-86688484 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 439 12 892 132 3 176 1163 LDB3,OPN4
SE_02_100700221 chr10:86664041-86672677 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 221 5 307 47 2 88 488 LDB3,OPN4
SE_02_074400332 chr10:86664241-86685670 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 332 5 772 118 3 160 912 LDB3,OPN4
SE_02_101100106 chr10:86664355-86681669 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 106 5 627 92 3 134 794 LDB3,OPN4
SE_02_099700037 chr10:86664454-86673212 Sample_02_0997 iPSCs iPSC Derived Cardiomyocytes_4N 37 3 318 52 2 81 467 LDB3,OPN4
SE_01_009300482 chr10:86664489-86715188 Sample_01_0093 Aorta ascending aorta 482 18 1640 170 3 272 1812 LDB3,OPN4,BMPR1A
SE_02_155300378 chr10:86664610-86718788 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 378 20 1750 172 3 302 2135 LDB3,OPN4,BMPR1A
SE_02_121800739 chr10:86665036-86675157 Sample_02_1218 Bone marrow Daudi 739 4 372 67 2 88 467 LDB3,OPN4
SE_02_101500832 chr10:86665094-86715676 Sample_02_1015 Embryo H9_ Undifferentiated 832 15 1632 168 3 272 1812 LDB3,OPN4,BMPR1A
SE_02_090801531 chr10:86665097-86675672 Sample_02_0908 Heart left ventricle_DCM_LV1262 1531 1 389 72 2 89 467 LDB3,OPN4
SE_02_101400178 chr10:86665263-86673612 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 178 2 303 54 2 81 467 LDB3,OPN4
SE_02_123700350 chr10:86666101-86676305 Sample_02_1237 Skin MKL2_virus_positive 350 2 367 73 3 79 344 LDB3,OPN4
SE_02_123600079 chr10:86666176-86681921 Sample_02_1236 Skin MKL1_virus_positive 79 2 563 88 3 121 710 LDB3,OPN4
SE_01_011000077 chr10:86666190-86763899 Sample_01_0110 Aorta thoracic aorta_37y 77 36 2932 283 4 426 2750 BMPR1A,LDB3,OPN4
SE_02_075000795 chr10:86666697-86681260 Sample_02_0750 Lymphoma Rec-1_GSI 795 5 498 82 3 98 459 LDB3,OPN4
SE_01_010200207 chr10:86668489-86685514 Sample_01_0102 Artery tibial artery 207 8 607 103 3 118 510 LDB3,OPN4
SE_02_074700644 chr10:86676596-86693984 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 644 1 591 57 0 103 830 LDB3,OPN4
SE_02_092300731 chr10:86678867-86689288 Sample_02_0923 Heart fetal heart_PCW10_12522 731 1 394 46 0 82 628 LDB3,OPN4
SE_02_114400212 chr10:86680208-86692478 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 212 5 439 47 0 67 595 LDB3,OPN4
SE_02_104800601 chr10:86681774-86718828 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 601 11 1130 81 0 174 1317 LDB3,OPN4,BMPR1A
SE_02_104701225 chr10:86684458-86724548 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1225 16 1190 82 0 164 1307 LDB3,OPN4,BMPR1A
Genomic distribution of SEs associated with OPN4
Genome Browser

The strength of the tissue affected by the gene

Expression of OPN4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)