SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000184650
Gene: ODF4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:8339840-8346048 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602162 chr17:8251150-8291015 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2162 12 1192 113 1 186 2923 PFAS,RANGRF,SLC25A35,AURKB,ARHGEF15,ODF4,LINC00324,CTC1
SE_02_067200396 chr17:8269833-8296384 Sample_02_0672 Endometrium endometrium cancer_DSG 396 9 730 74 1 96 1174 PFAS,RANGRF,SLC25A35,ARHGEF15,ODF4,LINC00324,CTC1
SE_02_067400684 chr17:8272314-8293593 Sample_02_0674 Endometrium E1_FA 684 5 578 58 0 73 910 RANGRF,SLC25A35,ARHGEF15,ODF4,LINC00324,PFAS,CTC1
SE_02_004500256 chr17:8272521-8296034 Sample_02_0045 Embryo endodermal CyT49_ES_D7 256 7 643 65 1 96 1061 RANGRF,SLC25A35,C17ORF44,PFAS,ARHGEF15,C17ORF68,ODF4
SE_02_111200989 chr17:8273348-8300686 Sample_02_1112 T lymphocyte THP-6 T-ALL 989 7 759 85 1 96 1061 RANGRF,SLC25A35,ARHGEF15,ODF4,LINC00324,PFAS,CTC1
SE_00_003101070 chr17:8273575-8296481 Sample_00_0031 Placenta placenta 1070 4 625 63 1 96 1061 RANGRF,SLC25A35,C17ORF44,PFAS,ARHGEF15,C17ORF68,ODF4
SE_02_104901168 chr17:8275487-8300226 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1168 14 690 78 1 96 1061 RANGRF,SLC25A35,ARHGEF15,PFAS,ODF4,CTC1
SE_02_004300878 chr17:8282341-8296023 Sample_02_0043 Embryo endodermal CyT49_ES_D2 878 3 377 35 1 93 1061 RANGRF,SLC25A35,PFAS,ARHGEF15,C17ORF68,ODF4
SE_02_082601757 chr17:8286042-8300086 Sample_02_0826 Stomach gastric tumor 1757 3 393 44 1 90 1061 RANGRF,SLC25A35,ARHGEF15,PFAS,ODF4,CTC1
SE_02_104602725 chr17:8304274-8326868 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2725 10 600 63 2 120 1760 ARHGEF15,SLC25A35,ODF4,KRBA2,RANGRF,LOC100128288
SE_02_049401106 chr17:8346541-8361928 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1106 2 433 91 2 7 266 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_147500975 chr17:8353209-8363574 Sample_02_1475 Bone CHLA-25 975 1 266 29 1 7 266 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_083100585 chr17:8353897-8367356 Sample_02_0831 Umblical vein HUVECs_TNF0min 585 7 325 25 1 10 266 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_146900615 chr17:8354362-8379583 Sample_02_1469 Umbilical Vein HUVEC 615 7 639 42 2 14 818 KRBA2,LOC100128288,RPL26,RNF222,ARHGEF15,ODF4,AC135178.1
SE_02_058500555 chr17:8354363-8367638 Sample_02_0585 Umbilical vein HUVEC 0hour 555 6 311 19 1 10 266 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_049500778 chr17:8357929-8361926 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 778 2 95 5 0 7 266 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_156901173 chr17:8358388-8362978 Sample_02_1569 Endothelial Endothelial cells 1173 1 103 6 1 7 249 LOC100128288,RNF222,KRBA2,ARHGEF15,ODF4,RPL26
SE_02_076201503 chr17:8361718-8393721 Sample_02_0762 Podocyte podocyte_CTL 1503 6 906 57 2 74 1385 KRBA2,RPL26,RNF222,NDEL1,ODF4,LOC100128288
SE_02_061000705 chr17:8362519-8393375 Sample_02_0610 Liposarcoma MLS 1765-92 705 8 871 54 1 69 1319 KRBA2,RPL26,RNF222,NDEL1,ODF4,LOC100128288
SE_02_147000737 chr17:8364371-8394093 Sample_02_1470 Umbilical Vein H441 737 6 864 54 1 78 1403 KRBA2,RPL26,RNF222,NDEL1,ODF4,LOC100128288
SE_02_116200780 chr17:8364698-8386871 Sample_02_1162 Stomach YCC11 780 10 646 44 1 18 736 KRBA2,RPL26,RNF222,NDEL1,ODF4,LOC100128288
SE_02_006900245 chr17:8365090-8392883 Sample_02_0069 Brain SF268 245 5 809 53 1 46 1189 KRBA2,RPL26,RNF222,ODF4,LOC100128288,NDEL1
SE_02_061501067 chr17:8365144-8392294 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1067 4 793 53 1 38 1038 KRBA2,RPL26,RNF222,NDEL1,ODF4,LOC100128288
SE_02_076000996 chr17:8365534-8385820 Sample_02_0760 Ovary BIN-67_SMARCA4 996 3 586 42 1 16 736 KRBA2,RPL26,RNF222,ODF4,LOC100128288
SE_02_104901464 chr17:8373804-8394764 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1464 15 655 43 0 77 1129 RPL26,KRBA2,RNF222,NDEL1,ODF4,LOC100128288
SE_02_021200289 chr17:8375186-8394301 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 289 2 602 38 0 76 1114 RPL26,RNF222,ODF4,LOC100128288,NDEL1,KRBA2
SE_02_004600748 chr17:8375197-8384226 Sample_02_0046 Embryo endodermal CyT49_ES_D10 748 2 307 21 0 12 425 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_02_004500787 chr17:8375200-8384150 Sample_02_0045 Embryo endodermal CyT49_ES_D7 787 3 303 21 0 12 425 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_01_001200452 chr17:8375565-8385780 Sample_01_0012 Lung A549_dexamethasone_1h 452 2 330 24 0 14 425 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_00_001100583 chr17:8375612-8437420 Sample_00_0011 Esophagus esophagus 583 12 1803 114 0 246 1386 NDEL1,RPL26,RNF222,ODF4,LOC100128288,KRBA2,AC135178.1,ARHGEF15
SE_01_002700805 chr17:8375724-8411328 Sample_01_0027 Prostate epithelial-cell-of-prostate 805 5 1058 64 0 129 1227 RPL26,RNF222,ODF4,LOC100128288,NDEL1,KRBA2
SE_02_003601649 chr17:8375743-8385745 Sample_02_0036 Embryo H7 1649 4 325 24 0 14 420 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_02_111200234 chr17:8380580-8389739 Sample_02_1112 T lymphocyte THP-6 T-ALL 234 1 310 18 0 10 145 RPL26,RNF222,KRBA2,NDEL1,ODF4,LOC100128288
SE_02_135201097 chr17:8380806-8385895 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 1097 2 172 11 0 8 145 RPL26,RNF222,KRBA2,NDEL1,ODF4,LOC100128288
SE_01_011200553 chr17:8381105-8384196 Sample_01_0112 Embryonic kidney HEK293_encode 553 1 123 4 0 6 145 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_02_136400558 chr17:8382695-8385822 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 558 1 97 7 0 6 101 RPL26,RNF222,KRBA2,ODF4,LOC100128288
SE_02_123200634 chr17:8383575-8394061 Sample_02_1232 Lung PC9_siMED13L-2 634 4 309 17 0 63 665 RNF222,KRBA2,NDEL1,ODF4,LOC100128288,RPL26
SE_02_104603419 chr17:8385096-8416037 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3419 8 912 63 0 131 805 RNF222,KRBA2,NDEL1,ODF4,LOC100128288,RPL26
Genomic distribution of SEs associated with ODF4
Genome Browser

The strength of the tissue affected by the gene

Expression of ODF4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)