SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000183426
Gene: NPIPA1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:14922802-14952060 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103602448 chr16:14913331-14922877 Sample_02_1036 Mammary gland HCC70_XY018 2448 8 52 1 0 87 101 MIR6511A4,NPIPA1,MIR3180-1,MIR3179-2,MIR3670-2,MIR3180-2,MIR6770-2,LOC100288162
SE_02_103500808 chr16:14969532-15020988 Sample_02_1035 Mammary gland HCC70_Vehicle 808 14 1299 97 1 90 714 PDXDC1,MIR1972-2,MIR6511A4,NPIPA1,LOC100288162,MIR6770-2,MIR1972-1,NTAN1
SE_02_103600547 chr16:14970388-15024740 Sample_02_1036 Mammary gland HCC70_XY018 547 22 1374 106 1 91 742 PDXDC1,MIR1972-2,MIR6511A4,NPIPA1,LOC100288162,MIR6770-2,MIR1972-1,NTAN1
SE_02_077501809 chr16:14971306-15003468 Sample_02_0775 Pancreas EndoC-BH1_SE 1809 14 770 67 1 41 407 PDXDC1,MIR6511A4,NPIPA1,LOC100288162,MIR6770-2,MIR1972-1
SE_02_104701854 chr16:14972354-15049150 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1854 22 2127 175 25 155 2088 PDXDC1,NTAN1,MIR1972-2,MIR6511A4,LOC100288162,MIR6770-2,LOC100505915,NPIPA1,MIR1972-1,RRN3
Genomic distribution of SEs associated with NPIPA1
Genome Browser

The strength of the tissue affected by the gene

Expression of NPIPA1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)