SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000176953
Gene: NFATC2IP Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:28950807-28967097 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_036800120 chr16:28873737-28911766 Sample_02_0368 Skeletal muscle NS134 120 3 989 75 20 33 3422 RABEP2,SH2B1,ATP2A1,TUFM,CD19,NFATC2IP
SE_01_009400877 chr16:28873810-28911049 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 877 12 973 74 19 29 3329 ATP2A1,SH2B1,ATP2A1-AS1,RABEP2,CD19,NFATC2IP,MIR4517,TUFM,MIR4721
SE_02_036700316 chr16:28874744-28911509 Sample_02_0367 Skeletal muscle NS129 316 7 957 72 18 33 3266 RABEP2,ATP2A1,SH2B1,TUFM,CD19,NFATC2IP
SE_02_102900920 chr16:28897666-28948808 Sample_02_1029 Colon HCT116 920 23 1284 86 9 144 3766 ATP2A1,CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,SPNS1
SE_02_111200743 chr16:28898754-28946127 Sample_02_1112 T lymphocyte THP-6 T-ALL 743 11 1195 81 9 144 3604 ATP2A1,CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,SPNS1
SE_02_036200141 chr16:28902281-28933813 Sample_02_0362 Haematopoietic and lymphoid tissue REH 141 4 811 54 9 102 2495 RABEP2,ATP2A1,CD19,SH2B1,NFATC2IP,SPNS1
SE_01_008400998 chr16:28902289-28946421 Sample_01_0084 Spleen spleen 998 7 1126 75 9 144 3305 RABEP2,ATP2A1,CD19,SH2B1,LAT,NFATC2IP,SPNS1
SE_02_073900523 chr16:28907907-28935770 Sample_02_0739 Blood Nalm6 523 7 673 44 5 94 1512 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_012300321 chr16:28909203-28926788 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 321 3 434 29 4 60 888 RABEP2,ATP2A1,SH2B1,CD19,NFATC2IP,SPNS1
SE_01_005500299 chr16:28909872-28936914 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 299 6 648 39 5 102 1617 RABEP2,CD19,ATP2A1,SH2B1,LAT,NFATC2IP,SPNS1
SE_00_003601508 chr16:28909907-28926345 Sample_00_0036 Small intestine small-intestine_108days 1508 2 411 29 4 60 888 RABEP2,ATP2A1,SH2B1,CD19,NFATC2IP,SPNS1
SE_02_012200293 chr16:28909960-28933972 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 293 3 578 38 5 87 1326 RABEP2,CD19,ATP2A1,SH2B1,NFATC2IP,SPNS1
SE_02_078200637 chr16:28910062-28945705 Sample_02_0782 Blood MEC1 637 6 863 56 5 129 2137 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_00_003900801 chr16:28910108-28933477 Sample_00_0039 Spleen spleen_3y 801 3 569 38 5 86 1283 RABEP2,CD19,ATP2A1,SH2B1,NFATC2IP,SPNS1
SE_00_000500713 chr16:28910299-28933786 Sample_00_0005 Blood B-cell 713 3 568 38 5 87 1289 RABEP2,CD19,ATP2A1,SH2B1,NFATC2IP,SPNS1
SE_02_075000337 chr16:28910386-28945647 Sample_02_0750 Lymphoma Rec-1_GSI 337 11 857 56 5 129 2089 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_073300499 chr16:28910585-28933592 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 499 4 559 36 4 87 1219 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,ATP2A1,SPNS1
SE_02_088500488 chr16:28910981-28945702 Sample_02_0885 Blood NALM6_2 488 7 842 53 3 115 1959 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_075100329 chr16:28911811-28937125 Sample_02_0751 Lymphoma Rec-1_WO 329 12 608 35 2 85 1412 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_057300454 chr16:28912276-28945639 Sample_02_0573 Blood Nalm6_1 454 9 812 49 2 111 1875 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_072800517 chr16:28912292-28936490 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 517 5 585 32 2 78 1251 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_072900384 chr16:28912420-28936532 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 384 5 582 30 2 79 1259 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SH2B1,MIR4517,LAT,ATP2A1,SPNS1
SE_02_104801093 chr16:28914109-28945886 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1093 6 771 46 2 111 1859 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,LAT,ATP2A1
SE_02_124900424 chr16:28921281-28945672 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 424 11 577 33 2 97 1544 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,LAT,ATP2A1
SE_02_073100402 chr16:28921992-28936486 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 402 3 329 15 2 64 919 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,LAT,ATP2A1
SE_02_073000463 chr16:28922043-28933620 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 463 2 263 14 2 55 718 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,ATP2A1
SE_02_075800277 chr16:28922598-28936633 Sample_02_0758 Peripheral blood REH 277 2 319 14 1 70 953 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,LAT,ATP2A1
SE_02_012000344 chr16:28922733-28933396 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 344 2 248 13 1 53 676 RABEP2,CD19,ATP2A1,NFATC2IP,SPNS1
SE_00_004000903 chr16:28922857-28945912 Sample_00_0040 Spleen spleen_30y 903 4 551 32 1 97 1544 RABEP2,CD19,ATP2A1,LAT,NFATC2IP,SPNS1
SE_00_005501206 chr16:28922866-28926266 Sample_00_0055 Spleen spleen 34y 1206 1 84 3 0 28 295 RABEP2,ATP2A1-AS1,CD19,NFATC2IP,SPNS1,MIR4517,ATP2A1
SE_02_106500455 chr16:28923040-28934398 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 455 4 259 13 1 55 733 CD19,RABEP2,ATP2A1-AS1,NFATC2IP,SPNS1,MIR4517,ATP2A1
SE_02_004500876 chr16:28924007-28926201 Sample_02_0045 Embryo endodermal CyT49_ES_D7 876 1 48 3 0 28 295 RABEP2,ATP2A1,NFATC2IP,CD19,SPNS1
SE_02_149200588 chr16:28976289-29044207 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 588 18 1584 120 2 121 2154 LAT,SPNS1,CD19,NFATC2IP,MIR4517,RRN3P2
SE_02_087500289 chr16:28976583-29126787 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 289 39 3255 303 5 121 3266 LAT,SPNS1,RRN3P2,CD19,NFATC2IP,MIR4517
SE_02_122900270 chr16:28976608-29031742 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 270 45 1437 111 2 121 2154 LAT,SPNS1,CD19,NFATC2IP,MIR4517,RRN3P2,RABEP2
SE_02_104600850 chr16:28978316-29061066 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 850 22 1712 124 2 106 2043 LAT,SPNS1,CD19,NFATC2IP,MIR4517,RRN3P2
SE_02_045900116 chr16:28981183-29043680 Sample_02_0459 Blood ME-1_DMSO_6h 116 14 1458 111 2 95 1693 LAT,SPNS1,CD19,NFATC2IP,MIR4517,RRN3P2
SE_02_058000340 chr16:28981315-29024225 Sample_02_0580 Blood HEL_sgSIK3e4 340 12 1127 92 1 95 1681 LAT,SPNS1,CD19,NFATC2IP,MIR4517
SE_02_057900305 chr16:28981340-29024261 Sample_02_0579 Blood HEL_sgNeg2 305 12 1128 91 1 95 1674 LAT,SPNS1,CD19,NFATC2IP,MIR4517
SE_02_057600355 chr16:28981350-29024276 Sample_02_0576 Blood HEL_sgLKB1e2 355 10 1128 91 1 95 1672 LAT,SPNS1,CD19,NFATC2IP,MIR4517
SE_02_104801060 chr16:28981923-28991596 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1060 4 279 20 0 72 1550 LAT,SPNS1,CD19,NFATC2IP,MIR4517
SE_02_107100232 chr16:28982325-28987980 Sample_02_1071 Blood Jurkat_WT 232 2 169 12 0 52 1126 LAT,SPNS1,NFATC2IP,MIR4517
SE_01_004300188 chr16:28982715-29032030 Sample_01_0043 Blood KOPT-K1 188 5 1292 98 1 73 1373 LAT,SPNS1,RRN3P2,NFATC2IP
SE_02_017600283 chr16:28982770-29030917 Sample_02_0176 Peripheral blood LOUCY 283 6 1263 98 1 71 1366 LAT,SPNS1,RRN3P2,NFATC2IP
SE_02_034900498 chr16:28982787-28987557 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 498 1 151 10 0 44 1030 LAT,SPNS1,NFATC2IP
SE_02_109500722 chr16:28983470-28990284 Sample_02_1095 Blood CD34 Erythroid cells_Don002 722 2 210 15 0 46 1118 LAT,SPNS1,NFATC2IP,MIR4517
SE_02_130100274 chr16:28987028-29029851 Sample_02_1301 Blood PER-117 274 9 1089 86 1 27 342 LAT,NFATC2IP,MIR4517,SPNS1,RRN3P2
SE_04_000101166 chr16:28991355-29032034 Sample_04_0001 Blood heat shocked K562 1166 8 1042 81 1 16 0 NFATC2IP,MIR4517,SPNS1,LAT,RRN3P2,CD19,RABEP2
Genomic distribution of SEs associated with NFATC2IP
Genome Browser

The strength of the tissue affected by the gene

Expression of NFATC2IP

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)