SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: NCRNA00029 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003400244 chr20:62952328-62991216 Sample_02_0034 Peripheral blood CUTLL1_GSI 244 7 1339 96 3 121 1842 SLC17A9,C20ORF11,LOC100144597,BHLHE23,LOC63930,DIDO1,NCRNA00029
SE_02_000300098 chr20:62962339-62996498 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 98 9 1159 87 3 98 1190 SLC17A9,C20ORF11,LOC100144597,BHLHE23,LOC63930,DIDO1,NCRNA00029
SE_02_027500506 chr20:62972171-63031050 Sample_02_0275 Retina FW14 506 8 1904 141 1 118 466 LOC63930,BHLHE23,C20ORF11,LOC100144597,DIDO1,NCRNA00029,SLC17A9
SE_02_003500325 chr20:62973903-62987397 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 325 1 445 40 1 58 0 C20ORF11,BHLHE23,LOC63930,DIDO1,NCRNA00029,SLC17A9
SE_01_002100639 chr20:62976873-62997039 Sample_01_0021 Skin bipolar-neuron 639 4 635 50 0 53 0 C20ORF11,LOC100144597,BHLHE23,LOC63930,DIDO1,NCRNA00029,SLC17A9
SE_02_037800207 chr20:62978765-63002511 Sample_02_0378 Skeletal muscle SCMC 207 3 735 53 0 62 0 C20ORF11,LOC100144597,BHLHE23,LOC63930,DIDO1,NCRNA00029,SLC17A9
SE_02_022100321 chr20:62998504-63012301 Sample_02_0221 Blood CCRF-CEM 321 2 410 19 0 42 466 LOC63930,BHLHE23,NCRNA00029,SLC17A9,LOC100144597
SE_02_003500166 chr20:63004701-63010797 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 166 1 163 11 0 32 466 LOC63930,BHLHE23,NCRNA00029,LOC100144597
SE_02_034900219 chr20:63004753-63018610 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 219 2 441 30 0 29 466 LOC63930,BHLHE23,NCRNA00029,LOC100144597
SE_02_032100711 chr20:63008448-63016224 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 711 1 244 13 0 0 107 LOC63930,NCRNA00029,LOC100144597,BHLHE23
SE_02_024100426 chr20:63083157-63106935 Sample_02_0241 Colon V456 426 6 959 85 2 35 1437 HAR1B,HAR1A,LOC63930,NCRNA00029,LOC100144597
Genomic distribution of SEs associated with NCRNA00029
Genome Browser

The strength of the tissue affected by the gene

Expression of NCRNA00029

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)