SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000123338
Gene: NCKAP1L Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:54497752-54548243 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_014400269 chr12:54382185-54449390 Sample_02_0144 Peripheral blood MV411_DMSO 269 7 1610 113 3 595 2855 ZNF385A,ITGA5,NCKAP1L,MIR148B,GTSF1,GPR84
SE_02_133200357 chr12:54403038-54461626 Sample_02_1332 Blood Monomac6_CTRL 357 14 1424 110 2 393 1506 LOC102724050,GTSF1,ITGA5,GPR84,ZNF385A,NCKAP1L
SE_02_033700214 chr12:54405937-54449288 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 214 7 1036 80 2 326 794 ITGA5,ZNF385A,NCKAP1L,GTSF1,GPR84
SE_02_057500570 chr12:54406855-54456873 Sample_02_0575 Blood MOLM13_sgLKB1e2 570 19 1195 95 2 336 815 LOC102724050,GTSF1,ITGA5,GPR84,ZNF385A,NCKAP1L
SE_02_068200136 chr12:54407459-54451017 Sample_02_0682 Blood Kasumi-1 136 9 1049 79 2 314 762 LOC102724050,ITGA5,GPR84,ZNF385A,GTSF1,NCKAP1L
SE_02_109800100 chr12:54407462-54462813 Sample_02_1098 Blood THP1_DMSO_noPMA 100 18 1337 107 2 351 946 LOC102724050,GTSF1,ITGA5,GPR84,ZNF385A,NCKAP1L
SE_02_033200463 chr12:54411216-54466907 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 463 8 1306 96 2 355 603 GTSF1,ITGA5,ZNF385A,NCKAP1L,GPR84
SE_02_129900489 chr12:54411251-54456168 Sample_02_1299 Liver liver 489 13 1063 73 2 291 376 LOC102724050,GTSF1,ITGA5,GPR84,ZNF385A,NCKAP1L
SE_02_033300409 chr12:54411336-54451845 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 409 8 958 62 2 282 335 ITGA5,ZNF385A,NCKAP1L,GTSF1,GPR84
SE_02_050100142 chr12:54411554-54449159 Sample_02_0501 Blood HL-60_CTRL 142 7 888 59 2 280 335 LOC102724050,ITGA5,GPR84,ZNF385A,GTSF1,NCKAP1L
SE_00_002400200 chr12:54412175-54453868 Sample_00_0024 Embryo mesendoderm 200 7 979 65 2 265 215 ITGA5,ZNF385A,NCKAP1L,GTSF1,GPR84
SE_02_092600220 chr12:54442893-54476232 Sample_02_0926 Blood NB4_1 220 16 762 74 2 94 395 LOC102724050,GTSF1,NCKAP1L,ITGA5
SE_02_104602116 chr12:54544668-54608071 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2116 15 1689 119 6 452 2561 PDE1B,PPP1R1A,NCKAP1L,DCD,GLYCAM1,LACRT
Genomic distribution of SEs associated with NCKAP1L
Genome Browser

The strength of the tissue affected by the gene

Expression of NCKAP1L

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)