SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000125148
Gene: MT2A Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:56608584-56609497 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_118700042 chr16:56505482-56561430 Sample_02_1187 Brain GBM16 42 17 1612 202 2 94 377 BBS2,MT4,MT2A,MT3
SE_02_120300244 chr16:56507276-56559872 Sample_02_1203 Brain NB1 244 13 1519 191 2 87 334 BBS2,MT4,MT2A,MT3
SE_02_118200142 chr16:56534329-56561547 Sample_02_1182 Brain GBM11 142 12 874 134 0 39 0 MT4,BBS2,MT2A,MT3
SE_02_096200381 chr16:56534453-56558966 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 381 11 771 122 0 39 0 MT4,BBS2,MT2A,MT3
SE_02_121300575 chr16:56538773-56559776 Sample_02_1213 Brain GBM31 575 9 656 103 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119100813 chr16:56538931-56558944 Sample_02_1191 Brain GBM25 813 7 628 101 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119200357 chr16:56538974-56559251 Sample_02_1192 Brain GBM26 357 4 634 102 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_117800199 chr16:56539277-56559727 Sample_02_1178 Brain GBM07 199 6 643 102 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_118000176 chr16:56539335-56559272 Sample_02_1180 Brain GBM09 176 7 624 102 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_118400303 chr16:56539370-56559279 Sample_02_1184 Brain GBM13 303 8 623 102 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_095600415 chr16:56539449-56558980 Sample_02_0956 Brain IDH1_2658 415 8 614 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_118100324 chr16:56539483-56559495 Sample_02_1181 Brain GBM10 324 8 629 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_118300317 chr16:56539546-56559696 Sample_02_1183 Brain GBM12 317 7 631 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119600388 chr16:56539555-56561397 Sample_02_1196 Brain GBM32 388 9 702 111 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119400404 chr16:56539556-56559961 Sample_02_1194 Brain GBM28 404 9 644 104 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_097700210 chr16:56539587-56561219 Sample_02_0977 Brain 2089_H3.3K27WT 210 9 692 110 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_117700188 chr16:56539590-56561311 Sample_02_1177 Brain GBM05 188 9 694 111 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119300176 chr16:56539672-56561124 Sample_02_1193 Brain GBM27 176 8 691 110 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_118500600 chr16:56539680-56559407 Sample_02_1185 Brain GBM14 600 4 620 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_117500727 chr16:56539710-56559023 Sample_02_1175 Brain GBM03 727 9 605 99 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_120400516 chr16:56539718-56559647 Sample_02_1204 Brain NB2 516 8 624 100 0 38 0 MT4,BBS2,MT2A,MT3,MT1F,NUDT21,NUP93
SE_02_117900066 chr16:56539729-56559698 Sample_02_1179 Brain GBM08 66 7 624 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_097901013 chr16:56539736-56559566 Sample_02_0979 Brain JN14-BS1_H3.3K27M 1013 10 620 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_119800429 chr16:56539751-56561112 Sample_02_1198 Brain GBM34 429 9 687 110 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_121100162 chr16:56539753-56559397 Sample_02_1211 Brain GBM21 162 6 617 100 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_121000290 chr16:56539770-56558937 Sample_02_1210 Brain GBM17 290 8 603 99 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_095300343 chr16:56539783-56559357 Sample_02_0953 Brain H3.3K27M_1840 343 4 615 99 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_117400378 chr16:56539815-56559057 Sample_02_1174 Brain GBM02 378 5 600 98 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_096900692 chr16:56539819-56558909 Sample_02_0969 Brain H3.3K27M_PL637 692 6 599 98 0 38 0 MT4,BBS2,MT2A,MT3
SE_02_120501004 chr16:56539884-56559108 Sample_02_1205 Brain NB3 1004 5 599 98 0 38 0 MT4,BBS2,MT2A,MT3,MT1F,NUDT21,NUP93
SE_02_121200508 chr16:56542548-56559505 Sample_02_1212 Brain GBM30 508 6 512 73 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_085700412 chr16:56544207-56559510 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 412 3 439 53 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_120200732 chr16:56544464-56559423 Sample_02_1202 Brain GBM38 732 5 428 52 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_085600448 chr16:56545090-56559120 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 448 2 399 47 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_079400128 chr16:56545322-56559340 Sample_02_0794 Brain 1552 128 3 400 47 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_078500217 chr16:56545414-56558808 Sample_02_0785 Brain 2097 217 8 386 45 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_097800348 chr16:56545695-56559366 Sample_02_0978 Brain 2168_IDH1 348 7 387 45 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_141001262 chr16:56545832-56559279 Sample_02_1410 Brain GSC6 1262 4 376 45 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_080100516 chr16:56546501-56559157 Sample_02_0801 Brain 2235 516 4 351 43 0 32 0 MT4,BBS2,MT2A,MT3
SE_02_083200434 chr16:56604916-56608462 Sample_02_0832 Umblical vein HUVECs_TNF30min 434 1 106 12 0 2 23 MT4,MT1L,MT1F,MT2A,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M
SE_00_002300677 chr16:56605317-56608485 Sample_00_0023 Embryo mesenchymal-stem-cell 677 1 98 11 0 2 26 MT4,MT1E,MT1A,MT3,MT1DP,MT1M,MT1L,MT1B,MT2A,MT1JP,MT1F
SE_02_105400778 chr16:56605450-56608475 Sample_02_1054 Esophagus SKGT4 778 1 91 10 0 2 25 MT4,MT1L,MT1F,MT2A,MT1DP,MT1E,MT1A,MT1JP,MT1B,MT3,MT1M
Genomic distribution of SEs associated with MT2A
Genome Browser

The strength of the tissue affected by the gene

Expression of MT2A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)