SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000057468
Gene: MSH4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:75796882-75913242 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200733 chr1:75783271-75794023 Sample_04_0002 Blood cold shocked K562 733 1 320 38 1 21 369 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_04_000100836 chr1:75783423-75791759 Sample_04_0001 Blood heat shocked K562 836 1 263 29 1 19 318 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_054501088 chr1:75783730-75789121 Sample_02_0545 Bone marrow K562 WT 1088 1 189 19 1 8 158 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_113000787 chr1:75783829-75789718 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 787 1 201 22 1 10 196 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_106000527 chr1:75783903-75790531 Sample_02_1060 Bone TC71_SA2 KO 527 1 218 24 1 14 258 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_042700475 chr1:75783964-75792664 Sample_02_0427 Colon HCT116_shPAF1 475 1 261 28 1 21 356 RABGGTB,SNORD45C,SNORD45A,SNORD45B,MSH4
SE_02_106100679 chr1:75783974-75791998 Sample_02_1061 Bone TC71_WT 679 1 244 26 1 19 321 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_148800680 chr1:75783974-75791998 Sample_02_1488 Bone TC-71 680 1 244 26 1 19 321 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_057900882 chr1:75784057-75789693 Sample_02_0579 Blood HEL_sgNeg2 882 1 188 19 1 10 195 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_058000785 chr1:75784062-75790517 Sample_02_0580 Blood HEL_sgSIK3e4 785 1 207 21 1 14 257 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_057600877 chr1:75784076-75790961 Sample_02_0576 Blood HEL_sgLKB1e2 877 1 221 24 1 14 277 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_055500856 chr1:75784216-75792233 Sample_02_0555 Other HAP1_WT 856 1 235 26 1 20 327 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_140500295 chr1:75784261-75789454 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 295 1 180 17 1 9 178 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
SE_02_103700668 chr1:75785465-75790555 Sample_02_1037 Pharynx FaDu Control 668 1 164 20 1 14 259 SNORD45C,RABGGTB,SNORD45A,SNORD45B,DLSTP1,MSH4
Genomic distribution of SEs associated with MSH4
Genome Browser

The strength of the tissue affected by the gene

Expression of MSH4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)