SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000207588
Gene: MIR593 Gene type: miRNA
Strand: + External links:
Genomic region: chr7:128081861-128081960 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120500161 chr7:127932813-128043284 Sample_02_1205 Brain NB3 161 58 2544 144 1 788 1102 SND1-IT1,SND1,LRRC4,MIR593
SE_02_120300482 chr7:127935957-128043221 Sample_02_1203 Brain NB1 482 24 2469 137 1 785 1102 SND1-IT1,SND1,LRRC4,MIR593
SE_02_004700309 chr7:127959813-128043419 Sample_02_0047 Pancreatic endoderm IIDP/donor790 309 13 1933 109 0 548 1102 C7ORF54,SND1,LRRC4,MIR593
SE_02_003300320 chr7:127960796-128040458 Sample_02_0033 Pancreas pancreatic-islets-F 320 15 1827 98 0 526 1102 C7ORF54,SND1,LRRC4,MIR593
SE_02_120400543 chr7:127973274-128043179 Sample_02_1204 Brain NB2 543 20 1675 94 0 528 1102 SND1-IT1,SND1,LRRC4,MIR593
SE_02_119500644 chr7:127982526-128054339 Sample_02_1195 Brain GBM29 644 19 1736 95 0 541 1102 SND1-IT1,SND1,LRRC4,MIR593
SE_02_046500913 chr7:127985054-128033033 Sample_02_0465 Adipose subcutaneous adipocytes 913 17 1153 66 0 414 1102 SND1-IT1,SND1,LRRC4,MIR593
SE_02_143300711 chr7:127991234-128033140 Sample_02_1433 Bone A673 STAG2 null 711 20 1017 60 0 401 1032 SND1-IT1,SND1,LRRC4,MIR593
SE_01_004000253 chr7:127998630-128039965 Sample_01_0040 Haematopoietic and lymphoid tissue Karpas-422 253 4 1008 61 0 423 891 C7ORF54,SND1,LRRC4,MIR593
SE_02_010400919 chr7:127999176-128032951 Sample_02_0104 Blood neutrophils 919 9 817 49 0 386 809 C7ORF54,SND1,LRRC4,MIR593
SE_01_009500263 chr7:128000666-128033182 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 263 10 800 46 0 383 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_011700291 chr7:128001764-128039579 Sample_02_0117 Haematopoietic and lymphoid tissue KARPAS-422 291 4 925 53 0 386 696 SND1,LRRC4,MIR593,C7ORF54
SE_02_143201698 chr7:128002867-128033145 Sample_02_1432 Bone A673 STAG2 WT 1698 15 738 44 0 368 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_097900521 chr7:128010270-128045288 Sample_02_0979 Brain JN14-BS1_H3.3K27M 521 10 878 51 0 367 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_093100550 chr7:128010646-128042727 Sample_02_0931 Embryo H9 UTXKO 550 4 812 49 0 358 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_095800175 chr7:128011145-128060117 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 175 14 1225 72 0 421 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_097000078 chr7:128011415-128077864 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 78 22 1652 107 0 513 925 SND1,LRRC4,SND1-IT1,MIR593
SE_02_103600844 chr7:128016126-128046730 Sample_02_1036 Mammary gland HCC70_XY018 844 5 765 47 0 312 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_103500668 chr7:128017515-128048090 Sample_02_1035 Mammary gland HCC70_Vehicle 668 11 782 47 0 308 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_119600868 chr7:128017590-128052502 Sample_02_1196 Brain GBM32 868 9 881 51 0 321 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_117600352 chr7:128017596-128043352 Sample_02_1176 Brain GBM04 352 5 665 43 0 302 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_096900387 chr7:128018061-128043481 Sample_02_0969 Brain H3.3K27M_PL637 387 4 657 42 0 300 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_095500153 chr7:128018124-128043158 Sample_02_0955 Brain IDH1_2469 153 3 646 41 0 300 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_118200272 chr7:128018516-128044298 Sample_02_1182 Brain GBM11 272 6 667 40 0 294 696 SND1,LRRC4,SND1-IT1,MIR593
SE_02_117900512 chr7:128027105-128043268 Sample_02_1179 Brain GBM08 512 3 408 25 0 218 670 SND1,LRRC4,SND1-IT1,MIR593
SE_02_096600751 chr7:128027156-128043037 Sample_02_0966 Brain H3.3K27M_JN29-BS3 751 7 402 25 0 217 664 SND1,LRRC4,SND1-IT1,MIR593
SE_02_096100192 chr7:128027414-128043063 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 192 4 392 25 0 210 618 SND1,LRRC4,SND1-IT1,MIR593
SE_02_096000393 chr7:128027625-128043073 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 393 4 388 24 0 203 590 SND1,LRRC4,SND1-IT1,MIR593
SE_02_098200371 chr7:128030392-128043472 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 371 2 335 21 0 110 168 SND1,LRRC4,SND1-IT1,MIR593
SE_02_098000205 chr7:128030558-128043087 Sample_02_0980 Brain BT245 205 2 318 20 0 95 136 SND1,LRRC4,SND1-IT1,MIR593
SE_02_098300194 chr7:128030559-128043086 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 194 2 318 20 0 95 136 SND1,LRRC4,SND1-IT1,MIR593
SE_02_099800497 chr7:128103313-128136514 Sample_02_0998 Lymphoma OCI-LY1_DMSO 497 14 822 89 0 88 0 MIR593
SE_02_068200349 chr7:128103576-128137513 Sample_02_0682 Blood Kasumi-1 349 10 835 94 0 89 0 MIR593
Genomic distribution of SEs associated with MIR593
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR593

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)