SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000265390
Gene: MIR4999 Gene type: miRNA
Strand: - External links:
Genomic region: chr19:8389290-8389380 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_088800932 chr19:8332614-8374097 Sample_02_0888 Heart left ventricle_LV1160 932 13 1197 148 3 157 1766 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_090601244 chr19:8333193-8368016 Sample_02_0906 Heart left ventricle_DCM_LV1072 1244 10 991 130 2 136 1253 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_130901169 chr19:8334807-8367920 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1169 7 957 121 2 120 884 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_146900725 chr19:8335384-8368619 Sample_02_1469 Umbilical Vein HUVEC 725 7 962 120 3 93 731 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_083200743 chr19:8335479-8367900 Sample_02_0832 Umblical vein HUVECs_TNF30min 743 11 939 118 2 87 713 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_128000616 chr19:8335751-8368946 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 616 7 964 121 3 80 634 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_058501005 chr19:8336844-8368105 Sample_02_0585 Umbilical vein HUVEC 0hour 1005 9 912 109 2 78 584 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_156900897 chr19:8340114-8371560 Sample_02_1569 Endothelial Endothelial cells 897 7 927 91 3 88 759 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_130800736 chr19:8340339-8367931 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 736 7 797 77 2 76 510 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_148000512 chr19:8342036-8368773 Sample_02_1480 Bone MHH-ES-1 512 7 783 75 3 70 510 ANGPTL4,KANK3,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28
SE_02_148200791 chr19:8345186-8374237 Sample_02_1482 Bone POE 791 11 845 74 3 62 817 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_046500600 chr19:8348041-8375756 Sample_02_0465 Adipose subcutaneous adipocytes 600 13 825 69 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_099100678 chr19:8351881-8368200 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 678 5 451 36 2 46 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_076201107 chr19:8351939-8371336 Sample_02_0762 Podocyte podocyte_CTL 1107 3 550 47 3 54 586 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_116900745 chr19:8352145-8375229 Sample_02_1169 Biliary H69_TGF beta_16h_2 745 7 665 54 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_081601567 chr19:8352146-8374160 Sample_02_0816 Ovary Clear cell ovarian cancer 1567 12 621 52 3 62 797 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_076300577 chr19:8352206-8371068 Sample_02_0763 Podocyte podocyte_DEX 577 3 526 46 3 51 521 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_116600787 chr19:8352255-8375982 Sample_02_1166 Biliary H69_TGF beta_16h_1 787 15 700 57 3 64 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_044500636 chr19:8352362-8369342 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 636 7 469 40 3 51 450 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137500461 chr19:8352397-8371120 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 461 15 525 46 3 51 528 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137400536 chr19:8352496-8371219 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 536 13 527 46 3 53 557 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137600563 chr19:8352539-8371217 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 563 15 526 46 3 53 556 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_151900480 chr19:8353663-8371377 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 480 15 510 46 3 54 592 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_152000607 chr19:8353732-8371225 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 607 12 498 44 3 52 559 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_151800416 chr19:8353762-8371564 Sample_02_1518 Umbilical vein HUVEC_Scr 416 12 516 45 3 57 633 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153200622 chr19:8354130-8373183 Sample_02_1532 Mammary gland MCF10A 622 5 539 45 3 59 663 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153700337 chr19:8354142-8380578 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 337 9 813 64 3 63 941 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_053000985 chr19:8354231-8375202 Sample_02_0530 Mammary gland MCF10A 985 12 605 49 3 63 889 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153600617 chr19:8354323-8367938 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 617 5 374 31 2 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_105400882 chr19:8354798-8367962 Sample_02_1054 Esophagus SKGT4 882 4 360 27 2 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153400761 chr19:8355029-8367402 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 761 4 339 24 2 35 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_153500295 chr19:8355056-8367431 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 295 5 339 24 2 38 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_137701114 chr19:8355113-8368588 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1114 6 369 28 3 45 383 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_061300598 chr19:8355118-8374042 Sample_02_0613 Liposarcoma MLPS_T1 598 9 531 42 3 61 774 ANGPTL4,RAB11B,RAB11B-AS1,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_072500592 chr19:8355335-8374710 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 592 5 552 40 3 63 879 RAB11B-AS1,ANGPTL4,RAB11B,MIR4999,MARCH2,NDUFA7,CD320,RPS28,KANK3
SE_02_147100819 chr19:8359996-8369650 Sample_02_1471 Blood Outgrowth Endothelia BOEC 819 1 271 20 3 50 474 ANGPTL4,RAB11B,RAB11B-AS1,NDUFA7,KANK3,MARCH2,MIR4999,RPS28
SE_02_146900688 chr19:8389402-8397799 Sample_02_1469 Umbilical Vein HUVEC 688 1 239 27 0 58 276 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_147100758 chr19:8389410-8397899 Sample_02_1471 Blood Outgrowth Endothelia BOEC 758 1 240 28 0 58 274 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_121300648 chr19:8389468-8399741 Sample_02_1213 Brain GBM31 648 2 301 38 0 61 274 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_117300469 chr19:8389535-8398787 Sample_02_1173 Brain GBM01 469 1 265 35 0 58 262 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_120300834 chr19:8390196-8398865 Sample_02_1203 Brain NB1 834 1 245 32 0 50 195 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_119600971 chr19:8390255-8398697 Sample_02_1196 Brain GBM32 971 2 239 30 0 50 182 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_02_090800483 chr19:8390931-8488107 Sample_02_0908 Heart left ventricle_DCM_LV1262 483 29 2791 244 9 364 2638 RAB11B,HNRNPM,MARCH2,RAB11B-AS1,MIR4999,PRAM1,ZNF414,KANK3,ANGPTL4
SE_02_090100382 chr19:8390938-8487690 Sample_02_0901 Heart left ventricle_LV1471 382 24 2778 244 9 364 2570 RAB11B,HNRNPM,MARCH2,RAB11B-AS1,MIR4999,PRAM1,ZNF414,KANK3,ANGPTL4
SE_02_090900350 chr19:8390941-8472452 Sample_02_0909 Heart left ventricle_DCM_LV1264 350 17 2335 203 5 322 2057 RAB11B,HNRNPM,MARCH2,RAB11B-AS1,MIR4999,PRAM1,ZNF414,KANK3,ANGPTL4
SE_02_092001015 chr19:8391030-8434513 Sample_02_0920 Heart left ventricle_DCM_LV1535 1015 12 1282 124 2 103 1345 RAB11B,MARCH2,RAB11B-AS1,MIR4999,HNRNPM,KANK3,ANGPTL4
SE_02_101300610 chr19:8391335-8398655 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 610 6 210 29 0 23 0 RAB11B,RAB11B-AS1,MIR4999,HNRNPM,MARCH2,KANK3,ANGPTL4
SE_00_005100737 chr19:8392696-8426081 Sample_00_0051 Adrenal gland adrenal gland 30y 737 18 1005 99 2 82 1113 RAB11B,MARCH2,RAB11B-AS1,MIR4999,HNRNPM,KANK3,ANGPTL4
SE_02_151900450 chr19:8392813-8435086 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 450 14 1243 115 2 97 1345 RAB11B,MARCH2,RAB11B-AS1,MIR4999,HNRNPM,KANK3,ANGPTL4
SE_01_010000123 chr19:8393312-8398186 Sample_01_0100 Thyroid gland thyroid gland_37y 123 4 132 12 0 9 0 RAB11B,RAB11B-AS1,MIR4999,MARCH2,HNRNPM,ANGPTL4
SE_02_100200069 chr19:8393487-8398199 Sample_02_1002 Brain Lateral temporal lobe_18T_Young 69 3 125 12 0 9 0 RAB11B,RAB11B-AS1,MIR4999,MARCH2,HNRNPM,ANGPTL4
SE_02_155500314 chr19:8394302-8434092 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 314 8 1180 110 2 85 1345 RAB11B,MARCH2,RAB11B-AS1,MIR4999,HNRNPM,ANGPTL4
SE_02_104601642 chr19:8395597-8448046 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1642 13 1546 131 2 119 1643 RAB11B,HNRNPM,MARCH2,RAB11B-AS1,MIR4999,ANGPTL4
SE_02_082600720 chr19:8397540-8454685 Sample_02_0826 Stomach gastric tumor 720 17 1652 147 4 119 1643 RAB11B,HNRNPM,MARCH2,RAB11B-AS1,MIR4999,ANGPTL4,PRAM1
SE_02_095001048 chr19:8411032-8460512 Sample_02_0950 Umbilical vein HUVEC_WT 1048 16 1381 95 3 125 962 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ANGPTL4,PRAM1
SE_02_146700646 chr19:8412906-8425061 Sample_02_1467 Blood HUDEP-2_LRFKO 646 2 366 24 1 26 370 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM,ANGPTL4
SE_02_087500918 chr19:8413126-8458253 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 918 12 1260 89 3 120 956 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ANGPTL4,PRAM1
SE_02_082100494 chr19:8414796-8434389 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 494 4 566 36 1 24 454 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM
SE_02_082300394 chr19:8415043-8424799 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 394 6 310 18 1 11 222 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM
SE_02_082200482 chr19:8415045-8424739 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 482 6 309 18 1 11 222 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM
SE_02_076201749 chr19:8415136-8460992 Sample_02_0762 Podocyte podocyte_CTL 1749 10 1288 84 4 113 814 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1
SE_02_082700602 chr19:8415417-8429012 Sample_02_0827 Stomach normal gastric 602 3 416 25 1 16 328 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM
SE_02_116900698 chr19:8415847-8466732 Sample_02_1169 Biliary H69_TGF beta_16h_2 698 17 1403 95 4 220 1018 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_104801232 chr19:8415848-8453893 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1232 6 1071 77 3 64 752 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1
SE_02_082000768 chr19:8415917-8424680 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 768 4 279 18 1 11 222 MARCH2,RAB11B,RAB11B-AS1,MIR4999,HNRNPM
SE_02_098901355 chr19:8417712-8484628 Sample_02_0989 Kidney kidney cortex_WT 1355 25 1881 148 7 250 1292 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_129700292 chr19:8421708-8490042 Sample_02_1297 Lung lung 292 23 1928 149 9 310 1852 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_129900240 chr19:8421715-8506803 Sample_02_1299 Liver liver 240 24 2482 203 11 343 2832 HNRNPM,MARCH2,PRAM1,RAB11B,RAB11B-AS1,MIR4999,ZNF414
SE_02_116600734 chr19:8422741-8465925 Sample_02_1166 Biliary H69_TGF beta_16h_1 734 13 1150 80 3 202 749 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_076600690 chr19:8422874-8460499 Sample_02_0766 Ovary PEO1 690 19 1026 69 2 100 592 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1,RPS28,ZNF414,CD320,NDUFA7,ADAMTS10,ANGPTL4
SE_02_105000317 chr19:8422916-8459484 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 317 12 998 69 2 100 592 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1
SE_02_081800791 chr19:8423032-8460500 Sample_02_0818 Ovary High-grade serous ovarian cancer 791 13 1023 68 2 100 592 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1
SE_02_067200655 chr19:8423044-8488419 Sample_02_0672 Endometrium endometrium cancer_DSG 655 15 1822 140 7 275 1580 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_067400681 chr19:8423054-8451988 Sample_02_0674 Endometrium E1_FA 681 9 795 53 2 54 530 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999
SE_02_116800761 chr19:8423084-8464595 Sample_02_1168 Biliary H69_TGF Vehicle_2 761 16 1118 73 3 181 693 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_116700748 chr19:8423094-8462440 Sample_02_1167 Biliary H69_TGF Vehicle_1 748 13 1065 70 3 127 602 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,PRAM1
SE_02_081700781 chr19:8423473-8450368 Sample_02_0817 Ovary Epithelial ovarian cancer 781 11 728 46 1 54 530 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999
SE_02_116000474 chr19:8424391-8450454 Sample_02_1160 Embryo H1_shLuc 474 5 711 44 1 53 530 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999
SE_02_148200511 chr19:8434538-8478628 Sample_02_1482 Bone POE 511 18 1211 92 4 222 794 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_143301211 chr19:8437782-8470138 Sample_02_1433 Bone A673 STAG2 null 1211 6 862 65 3 210 640 HNRNPM,MARCH2,RAB11B,RAB11B-AS1,MIR4999,ZNF414,PRAM1
SE_02_138300514 chr19:8438208-8491182 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 514 16 1491 114 8 300 1788 HNRNPM,MARCH2,PRAM1,RAB11B,RAB11B-AS1,MIR4999,ZNF414
SE_02_127800149 chr19:8438765-8506775 Sample_02_1278 Chordoma UCH1_DMSO_48h 149 16 1975 165 10 319 2395 HNRNPM,MARCH2,PRAM1,RAB11B,RAB11B-AS1,MIR4999,ZNF414
Genomic distribution of SEs associated with MIR4999
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR4999

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)