SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000284412
Gene: MIR4649 Gene type: miRNA
Strand: + External links:
Genomic region: chr7:44110849-44110912 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153001017 chr7:44070957-44084027 Sample_02_1530 Peripheral blood neutrophils_0BA0X 1017 1 386 35 0 41 1651 POLM,MIR6838,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,RASA4CP,DBNL
SE_02_152900959 chr7:44071776-44082591 Sample_02_1529 Peripheral blood neutrophils_0BC75 959 1 321 23 0 39 1615 POLM,MIR6838,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,RASA4CP,DBNL
SE_02_147101036 chr7:44072195-44089531 Sample_02_1471 Blood Outgrowth Endothelia BOEC 1036 2 502 49 0 44 1629 POLM,MIR6838,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,RASA4CP,DBNL
SE_02_141600721 chr7:44074052-44103364 Sample_02_1416 Brain SF9402 721 4 795 83 0 67 1240 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_086900167 chr7:44074855-44108772 Sample_02_0869 Fibroblast VH10_NO_UV 167 9 919 96 2 99 1846 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_077100347 chr7:44075407-44108419 Sample_02_0771 Ovary OVCA429_shGRHL2 347 18 899 94 2 99 1839 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_103501620 chr7:44075853-44090098 Sample_02_1035 Mammary gland HCC70_Vehicle 1620 5 393 41 0 35 1018 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,DBNL
SE_02_109700399 chr7:44076185-44102809 Sample_02_1097 Haematopoietic and lymphoid tissue 697 399 16 723 75 0 63 974 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_130000306 chr7:44076424-44107315 Sample_02_1300 Blood KARPAS-45 306 9 845 88 2 93 1431 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_107100084 chr7:44076539-44107016 Sample_02_1071 Blood Jurkat_WT 84 8 831 88 2 92 1376 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_095100441 chr7:44076923-44102654 Sample_02_0951 HMSCs hMSCs 441 8 688 74 0 60 826 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_157400018 chr7:44077248-44108339 Sample_02_1574 Blood JURKAT 18 15 840 90 2 95 1536 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_142700050 chr7:44077476-44109764 Sample_02_1427 Shoulder fibroblast_343 50 6 875 93 2 100 1707 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,GCK,MYL7,DBNL
SE_02_091500910 chr7:44077558-44102455 Sample_02_0915 Heart left ventricle_DCM_LV1371 910 7 662 71 0 57 708 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_121800257 chr7:44077656-44103275 Sample_02_1218 Bone marrow Daudi 257 12 681 73 0 58 694 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL,YKT6
SE_02_142600075 chr7:44077665-44109739 Sample_02_1426 Shoulder fibroblast_341 75 5 872 93 2 99 1680 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,GCK,MYL7,DBNL
SE_02_125200571 chr7:44077963-44104117 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 571 9 701 76 1 58 632 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_090901000 chr7:44078111-44107536 Sample_02_0909 Heart left ventricle_DCM_LV1264 1000 12 795 84 2 88 1161 POLM,AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,MYL7,DBNL
SE_02_103601419 chr7:44078237-44098219 Sample_02_1036 Mammary gland HCC70_XY018 1419 7 559 63 0 36 592 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_124900472 chr7:44078244-44104123 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 472 10 695 75 1 55 592 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_058600562 chr7:44079382-44094012 Sample_02_0586 Chordal patient-derived chordoma MGH_4 562 1 411 43 0 29 451 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_142800647 chr7:44081032-44091166 Sample_02_1428 Shoulder fibroblast_316 647 1 272 33 0 22 159 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,DBNL
SE_02_131000562 chr7:44082055-44104113 Sample_02_1310 Bone marrow ASMSCs 562 4 582 68 1 39 143 POLM,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,MYL7,DBNL
SE_02_142500057 chr7:44082710-44109603 Sample_02_1425 Shoulder fibroblast_384 57 10 731 83 2 72 988 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,GCK,MYL7,DBNL
SE_02_131100667 chr7:44082726-44106563 Sample_02_1311 Bone marrow HDMSCs 667 7 641 74 2 57 340 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_01_009300895 chr7:44082731-44096108 Sample_01_0093 Aorta ascending aorta 895 1 377 49 0 11 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_060500466 chr7:44082734-44106412 Sample_02_0605 Skin Skin Fibroblast_DMSO 466 5 636 74 2 57 317 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL,YKT6
SE_02_088500033 chr7:44082760-44109347 Sample_02_0885 Blood NALM6_2 33 1 721 82 2 72 925 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,GCK,MYL7,DBNL
SE_02_063600581 chr7:44082767-44102414 Sample_02_0636 Skin BJ5ta 581 5 522 61 0 30 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_056900435 chr7:44082777-44108689 Sample_02_0569 Periodontal ligament mesenchymal stem cell 435 7 701 78 2 67 768 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_01_011000239 chr7:44082777-44108997 Sample_01_0110 Aorta thoracic aorta_37y 239 6 711 81 2 68 831 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_060600460 chr7:44082798-44106445 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 460 4 636 74 2 57 321 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL,YKT6
SE_02_088601458 chr7:44082848-44090829 Sample_02_0886 Skin foreskin_ p63KLF4 1458 1 217 27 0 7 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,DBNL
SE_02_046600572 chr7:44083453-44109115 Sample_02_0466 Adipose visceral adipocytes 572 23 687 76 2 68 863 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_044400721 chr7:44083562-44107657 Sample_02_0444 Bone osteosarcoma tumor P10 721 12 644 69 2 62 587 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_044700450 chr7:44083852-44106884 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 450 10 615 67 2 61 438 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_119900161 chr7:44083852-44108301 Sample_02_1199 Brain GBM35 161 6 655 71 2 67 768 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_01_010200041 chr7:44083886-44109652 Sample_01_0102 Artery tibial artery 41 10 697 76 2 72 988 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,GCK,MYL7,DBNL
SE_02_061300468 chr7:44084014-44107544 Sample_02_0613 Liposarcoma MLPS_T1 468 14 626 66 2 61 557 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_083901106 chr7:44084205-44102339 Sample_02_0839 Embryo hNPCs_K755R/+ 1106 5 477 52 0 30 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_084001188 chr7:44084470-44102432 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1188 5 471 51 0 30 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_137900923 chr7:44084875-44101178 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 923 8 436 47 0 28 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_137500804 chr7:44084908-44107595 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 804 7 609 62 2 61 573 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_112900815 chr7:44085025-44108393 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 815 13 627 63 2 67 768 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_081601133 chr7:44085061-44107952 Sample_02_0816 Ovary Clear cell ovarian cancer 1133 8 618 63 2 66 681 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_112800557 chr7:44085382-44107328 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 557 7 587 57 2 61 505 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_086800887 chr7:44085405-44107844 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 887 8 602 59 2 65 637 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_063700202 chr7:44085460-44107416 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 202 9 586 57 2 61 524 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_086700484 chr7:44085483-44108156 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 484 12 610 60 2 67 738 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_053400305 chr7:44085500-44109829 Sample_02_0534 Blood vessel Circle of Willis_60y 305 13 658 66 2 72 988 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,GCK,MYL7,DBNL
SE_02_061400474 chr7:44085661-44107177 Sample_02_0614 Liposarcoma MLPS_T2 474 8 574 55 2 61 489 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_076901012 chr7:44086871-44107241 Sample_02_0769 Ovary HEYA8 1012 8 535 53 2 59 489 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_132201456 chr7:44087241-44090287 Sample_02_1322 Connective Tissue HT1080_WT 1456 1 71 6 0 1 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,DBNL
SE_02_158500272 chr7:44087801-44102284 Sample_02_1585 Blood SupB15 DMSO 272 8 368 38 0 26 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_084800421 chr7:44087861-44102258 Sample_02_0848 iPSCs iPSC_DMSO 421 4 367 38 0 26 0 MIR4649,LINC00957,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_079100072 chr7:44088474-44106959 Sample_02_0791 Brain 2455 72 4 484 49 2 59 465 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_139400270 chr7:44088539-44107605 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 270 5 500 51 2 60 578 AEBP1,MIR4649,LINC00957,POLD2,PGAM2,MIR6837,MIR6838,RASA4CP,POLM,MYL7,DBNL
SE_02_057300072 chr7:44090980-44104160 Sample_02_0573 Blood Nalm6_1 72 1 348 39 1 25 0 MIR4649,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,POLM,MYL7,DBNL,GCK
SE_02_075000253 chr7:44092036-44104218 Sample_02_0750 Lymphoma Rec-1_GSI 253 1 316 37 1 24 7 MIR4649,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,POLM,MYL7,DBNL
SE_02_111200479 chr7:44092730-44106704 Sample_02_1112 T lymphocyte THP-6 T-ALL 479 1 369 43 2 51 379 AEBP1,MIR4649,POLD2,PGAM2,MIR6837,MIR6838,POLM,MYL7,DBNL
SE_02_106900298 chr7:44092756-44107795 Sample_02_1069 Bone marrow Bone marrow aspirate 298 3 402 44 2 57 625 AEBP1,MIR4649,POLD2,PGAM2,MIR6837,MIR6838,POLM,MYL7,DBNL
SE_02_075800496 chr7:44094993-44104170 Sample_02_0758 Peripheral blood REH 496 1 225 27 1 22 0 MIR4649,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,POLM,MYL7
SE_02_063900298 chr7:44095723-44102599 Sample_02_0639 Blood T-ALL PDX 298 4 161 13 0 20 0 MIR4649,POLD2,PGAM2,MIR6837,AEBP1,MIR6838,POLM,MYL7
SE_02_058600727 chr7:44096403-44108023 Sample_02_0586 Chordal patient-derived chordoma MGH_4 727 1 303 29 2 55 699 AEBP1,MIR4649,POLD2,PGAM2,MIR6837,MIR6838,POLM,MYL7
SE_02_119500277 chr7:44099855-44110724 Sample_02_1195 Brain GBM29 277 1 307 28 2 63 1195 AEBP1,MIR4649,POLD2,PGAM2,MIR6837,GCK,MIR6838,POLM,MYL7
SE_02_092500194 chr7:44113021-44148160 Sample_02_0925 Heart fetal heart_PCW17_12570 194 9 912 99 3 154 2753 GCK,POLD2,AEBP1,MYL7,MIR4649,PGAM2,MIR6838,POLM
SE_02_074600089 chr7:44113821-44146940 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 89 9 859 98 3 139 2436 GCK,POLD2,AEBP1,MYL7,MIR4649,PGAM2,MIR6838,POLM
SE_02_092200262 chr7:44113973-44148442 Sample_02_0922 Heart fetal heart_PCW10_12434 262 6 892 99 3 144 2525 GCK,POLD2,AEBP1,MYL7,MIR4649,PGAM2,MIR6838,POLM
SE_02_092100196 chr7:44114202-44148420 Sample_02_0921 Heart embryonic heart_CS22 196 9 877 98 3 141 2476 GCK,POLD2,AEBP1,MYL7,MIR4649,PGAM2,MIR6838,POLM
SE_02_089801282 chr7:44114269-44140121 Sample_02_0898 Heart left ventricle_LV1356 1282 6 652 81 3 93 1442 POLD2,MYL7,AEBP1,MIR4649,PGAM2,GCK,MIR6838,POLM
SE_02_074500079 chr7:44128195-44148113 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 79 8 534 61 1 71 1308 MYL7,GCK,MIR4649,AEBP1,POLD2,POLM
SE_02_150301341 chr7:44130200-44196954 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1341 15 1936 183 22 148 2209 MYL7,GCK,MIR4649,AEBP1,YKT6,POLD2,POLM
SE_02_077501661 chr7:44130424-44152964 Sample_02_0775 Pancreas EndoC-BH1_SE 1661 11 598 63 3 90 1666 MYL7,GCK,MIR4649,AEBP1,YKT6,POLD2,POLM
SE_02_074400259 chr7:44131350-44148373 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 259 7 461 50 1 70 1308 MYL7,GCK,MIR4649,AEBP1,POLD2,POLM
SE_02_092301174 chr7:44133943-44142974 Sample_02_0923 Heart fetal heart_PCW10_12522 1174 1 254 31 1 27 636 MYL7,MIR4649,AEBP1,POLD2,GCK,PGAM2
SE_02_092400707 chr7:44134152-44142868 Sample_02_0924 Heart fetal heart_PCW10_12569 707 1 246 31 1 27 636 MYL7,MIR4649,AEBP1,POLD2,GCK,PGAM2
SE_02_074701034 chr7:44136406-44143376 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1034 1 203 22 1 24 636 MYL7,MIR4649,AEBP1,POLD2,GCK
Genomic distribution of SEs associated with MIR4649
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR4649

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)