SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000090674
Gene: MCOLN1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:7522624-7534009 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700077 chr19:7325961-7486228 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 77 89 5090 520 9 168 3303 PEX11G,ARHGEF18,LOC100128573,PNPLA6,INSR,MCOLN1,ZNF358,C19ORF45
SE_02_104801895 chr19:7456028-7476029 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1895 3 703 55 2 54 1778 ARHGEF18,LOC100128573,MCOLN1,ZNF358,C19ORF45,PEX11G
SE_02_103100569 chr19:7458040-7492823 Sample_02_1031 Head and neck SCC1 contol 569 12 1161 121 2 83 2426 PEX11G,ARHGEF18,LOC100128573,PNPLA6,ZNF358,C19ORF45,MCOLN1
SE_02_006900733 chr19:7458365-7489529 Sample_02_0069 Brain SF268 733 5 1067 106 2 83 2420 ARHGEF18,LOC100128573,PEX11G,PNPLA6,C19ORF45,MCOLN1,ZNF358
SE_02_021601043 chr19:7467227-7486651 Sample_02_0216 Skin NHEK_scramble 1043 3 687 81 1 51 1634 ARHGEF18,LOC100128573,PEX11G,PNPLA6,C19ORF45,MCOLN1,ZNF358
SE_02_133100927 chr19:7470556-7494940 Sample_02_1331 Blood Molm13_CTRL 927 6 813 102 1 33 1316 PEX11G,ARHGEF18,LOC100128573,PNPLA6,ZNF358,C19ORF45,MCOLN1
SE_02_078000285 chr19:7474833-7492123 Sample_02_0780 Liver SMMC-7721 285 1 556 78 0 31 720 PEX11G,PNPLA6,ZNF358,C19ORF45,MCOLN1,LOC100128573,ARHGEF18
SE_02_116200601 chr19:7475823-7515832 Sample_02_1162 Stomach YCC11 601 18 1208 130 2 45 1817 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_120300836 chr19:7476147-7501695 Sample_02_1203 Brain NB1 836 7 790 95 0 34 1003 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_051700731 chr19:7476595-7512952 Sample_02_0517 Esophagus TE5 731 8 1115 125 2 45 1817 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_050600717 chr19:7476596-7512952 Sample_02_0506 Esophagus TE5_1 717 8 1115 125 2 45 1817 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_120400823 chr19:7476923-7506857 Sample_02_1204 Brain NB2 823 7 931 106 1 39 1508 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_077501048 chr19:7486687-7501838 Sample_02_0775 Pancreas EndoC-BH1_SE 1048 4 431 45 0 11 427 C19ORF45,PEX11G,PNPLA6,ZNF358,MCOLN1,LOC100128573,ARHGEF18
SE_02_092800455 chr19:7486692-7495717 Sample_02_0928 Peripheral blood neutrophils_Ecoli 455 1 261 36 0 8 144 PEX11G,PNPLA6,ZNF358,C19ORF45,MCOLN1,LOC100128573,ARHGEF18
SE_00_000600792 chr19:7542266-7546575 Sample_00_0006 Blood CD14-positive-monocyte 792 1 145 15 1 19 205 PNPLA6,KIAA1543,C19ORF45,MCOLN1,ZNF358
SE_02_125300334 chr19:7568137-7622788 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 334 21 1668 196 2 247 3152 CAMSAP3,XAB2,MIR6792,PNPLA6,MCOLN1,PCP2,PET100,STXBP2,RETN
Genomic distribution of SEs associated with MCOLN1
Genome Browser

The strength of the tissue affected by the gene

Expression of MCOLN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)