SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000160294
Gene: MCM3AP Gene type: protein_coding
Strand: - External links:
Genomic region: chr21:46235133-46286297 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077600613 chr21:46289299-46330338 Sample_02_0776 Pancreas EndoC-BH1 613 6 1318 219 1 48 2673 PCNT,C21ORF58,YBEY,MCM3AP,C21orf58,AP001468.1
SE_02_109500295 chr21:46293385-46325777 Sample_02_1095 Blood CD34 Erythroid cells_Don002 295 4 1029 161 1 28 2424 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_082100065 chr21:46294332-46325719 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 65 4 1026 161 1 28 2424 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_043100386 chr21:46294631-46327011 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 386 3 1063 164 1 42 2505 C21ORF57,PCNT,C21ORF58,MCM3AP
SE_02_039601422 chr21:46294786-46326018 Sample_02_0396 Skin NHEK-D 1422 8 1016 157 1 33 2424 C21ORF57,PCNT,C21ORF58,MCM3AP
SE_02_082000047 chr21:46294839-46325435 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 47 5 999 152 1 26 2424 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_082300072 chr21:46296629-46325343 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 72 4 932 135 1 23 2297 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_082200062 chr21:46296667-46325715 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 62 4 936 135 1 25 2319 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_134300101 chr21:46296817-46323798 Sample_02_1343 Leukophereses leukophereses_p195 101 5 865 119 1 16 1872 C21ORF58,YBEY,MCM3AP,PCNT
SE_02_103500872 chr21:46297376-46345499 Sample_02_1035 Mammary gland HCC70_Vehicle 872 9 1534 204 1 39 2492 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_136300063 chr21:46304615-46325519 Sample_02_1363 Blood Hudep2 63 3 654 78 0 20 1709 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_085200444 chr21:46314716-46326666 Sample_02_0852 Mammary gland MCF7L-P 444 3 401 44 0 33 1638 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_115900445 chr21:46314716-46326666 Sample_02_1159 Mammary gland MCF7 445 3 401 44 0 33 1638 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_001600243 chr21:46316296-46326623 Sample_02_0016 Blood erythroblasts 243 1 336 34 0 31 1413 PCNT,C21ORF58,MCM3AP,C21ORF57
SE_02_146700104 chr21:46316679-46327980 Sample_02_1467 Blood HUDEP-2_LRFKO 104 1 377 41 0 31 1434 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_033600474 chr21:46317248-46328142 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 474 1 364 41 0 31 1381 PCNT,C21ORF58,MCM3AP,C21ORF57
SE_02_146600245 chr21:46317551-46326299 Sample_02_1466 Blood HUDEP-2_BCL11AKO 245 1 295 32 0 24 1272 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_146800450 chr21:46317779-46326462 Sample_02_1468 Blood HUDEP-2_WT 450 1 292 31 0 28 1288 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_101800212 chr21:46318112-46324482 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 212 2 219 20 0 10 912 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_057600310 chr21:46318439-46326327 Sample_02_0576 Blood HEL_sgLKB1e2 310 3 254 29 0 18 1144 PCNT,C21ORF58,YBEY,MCM3AP
SE_04_000100770 chr21:46318506-46338547 Sample_04_0001 Blood heat shocked K562 770 2 639 81 0 24 1282 PCNT,C21ORF58,YBEY,MCM3AP,SPATC1L,LSS,DIP2A
SE_02_058000323 chr21:46318516-46326367 Sample_02_0580 Blood HEL_sgSIK3e4 323 3 254 29 0 18 1128 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_109600354 chr21:46318611-46325911 Sample_02_1096 Blood CD34 Erythroid cells_Don003 354 1 234 29 0 12 1070 PCNT,C21ORF58,YBEY,MCM3AP
SE_04_000200851 chr21:46319185-46326745 Sample_04_0002 Blood cold shocked K562 851 1 239 29 0 24 1022 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_036200649 chr21:46319593-46326285 Sample_02_0362 Haematopoietic and lymphoid tissue REH 649 1 211 27 0 17 942 PCNT,C21ORF58,MCM3AP,C21ORF57
SE_01_003900597 chr21:46319940-46326637 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 597 1 215 27 0 24 986 PCNT,C21ORF58,MCM3AP,C21ORF57,DIP2A,LSS,C3AP,SPATC1L,YBEY
SE_02_054500756 chr21:46320720-46326117 Sample_02_0545 Bone marrow K562 WT 756 1 174 25 0 16 895 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_057901004 chr21:46320745-46323944 Sample_02_0579 Blood HEL_sgNeg2 1004 1 99 10 0 1 480 C21ORF58,YBEY,MCM3AP,PCNT
SE_02_062600176 chr21:46320774-46326863 Sample_02_0626 Mammary gland WS8_E2 176 1 200 26 0 24 969 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_101900041 chr21:46320790-46325525 Sample_02_1019 Umbilical cord HUDEP2_Day 41 1 160 22 0 8 885 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_113000683 chr21:46320799-46326032 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 683 1 170 25 0 15 885 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_122901039 chr21:46320812-46340200 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1039 5 610 83 0 24 1064 PCNT,C21ORF58,YBEY,MCM3AP,SPATC1L,LSS,DIP2A
SE_02_111600579 chr21:46320847-46326579 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 579 2 185 25 0 23 939 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_133200662 chr21:46320899-46326161 Sample_02_1332 Blood Monomac6_CTRL 662 1 170 25 0 16 879 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_109900788 chr21:46321142-46326903 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 788 2 189 25 0 24 936 PCNT,C21ORF58,YBEY,MCM3AP,SPATC1L,LSS,DIP2A
SE_02_055500556 chr21:46321531-46326616 Sample_02_0555 Other HAP1_WT 556 2 160 20 0 24 878 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_062700168 chr21:46321531-46326946 Sample_02_0627 Mammary gland WS8_VEH 168 1 173 21 0 24 899 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_109000552 chr21:46321579-46328168 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 552 4 208 29 0 24 896 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_062500200 chr21:46321593-46326913 Sample_02_0625 Mammary gland WS8_4OHT 200 1 168 21 0 24 893 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_123900482 chr21:46321612-46328416 Sample_02_1239 Skin Waga_virus_positive 482 2 213 30 0 24 889 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_109200467 chr21:46321686-46326848 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 467 2 163 21 0 24 879 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_108600522 chr21:46321738-46326612 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 522 3 150 20 0 24 852 PCNT,C21ORF58,YBEY,MCM3AP
SE_02_120500557 chr21:46324097-46396450 Sample_02_1205 Brain NB3 557 28 2685 354 7 62 2135 PCNT,YBEY,C21ORF58,MCM3AP
SE_02_104300073 chr21:46327813-46499553 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 73 91 5962 850 14 176 4663 DIP2A,PCNT,DIP2A-IT1,YBEY,C21ORF58,MCM3AP
SE_00_005100911 chr21:46332888-46363270 Sample_00_0051 Adrenal gland adrenal gland 30y 911 11 1081 128 2 21 907 PCNT,YBEY,C21ORF58,MCM3AP
Genomic distribution of SEs associated with MCM3AP
Genome Browser

The strength of the tissue affected by the gene

Expression of MCM3AP

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)