SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000132128
Gene: LRRC41 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:46261196-46303608 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103501482 chr1:46222944-46255801 Sample_02_1035 Mammary gland HCC70_Vehicle 1482 11 712 31 0 16 322 RAD54L,POMGNT1,TSPAN1,LURAP1,LRRC41,UQCRH,PIK3R3
SE_02_003801015 chr1:46242864-46264054 Sample_02_0038 Embryo DE 1015 3 492 24 2 60 617 RAD54L,UQCRH,POMGNT1,C1ORF190,LRRC41
SE_02_004300864 chr1:46253494-46264058 Sample_02_0043 Embryo endodermal CyT49_ES_D2 864 2 244 15 2 49 295 RAD54L,POMGNT1,LRRC41,UQCRH
SE_02_026801169 chr1:46305433-46333493 Sample_02_0268 Kidney A-498 1169 10 857 49 0 14 211 UQCRH,NSUN4,LRRC41
SE_02_012400985 chr1:46313615-46324554 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 985 1 336 22 0 1 73 UQCRH,NSUN4,LRRC41
SE_02_073900443 chr1:46318798-46342600 Sample_02_0739 Blood Nalm6 443 4 767 56 1 15 515 NSUN4,UQCRH,LRRC41
SE_02_003900441 chr1:46319326-46380695 Sample_02_0039 Embryo AFG 441 9 1790 332 1 82 1634 NSUN4,FAAH,LRRC41,UQCRH
SE_02_077501600 chr1:46319631-46358654 Sample_02_0775 Pancreas EndoC-BH1_SE 1600 8 1220 216 1 52 1125 NSUN4,UQCRH,FAAH,LRRC41,PIK3R3
SE_02_003000293 chr1:46320641-46333374 Sample_02_0030 Kidney human kidney proximal tubule cells 293 7 431 20 0 0 0 NSUN4,LRRC41,UQCRH
SE_02_081700632 chr1:46320681-46334396 Sample_02_0817 Ovary Epithelial ovarian cancer 632 5 459 21 0 0 0 UQCRH,NSUN4,LRRC41
SE_02_043000613 chr1:46320682-46334329 Sample_02_0430 Kidney 12364284 613 7 457 21 0 0 0 NSUN4,LRRC41,UQCRH
SE_02_042900459 chr1:46320787-46334580 Sample_02_0429 Kidney 12364284_VHL+ 459 8 462 21 0 0 0 NSUN4,LRRC41,UQCRH
SE_02_103601599 chr1:46330974-46376264 Sample_02_1036 Mammary gland HCC70_XY018 1599 22 1316 298 1 80 1634 NSUN4,UQCRH,FAAH,LRRC41
SE_02_122901427 chr1:46333920-46348170 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1427 7 410 80 1 43 1043 NSUN4,UQCRH,FAAH,LRRC41,RAD54L,NASP
SE_02_153000801 chr1:46337989-46375916 Sample_02_1530 Peripheral blood neutrophils_0BA0X 801 9 1050 280 1 80 1634 NSUN4,UQCRH,FAAH,LRRC41
SE_02_122400998 chr1:46339226-46344623 Sample_02_1224 Bone marrow normal plasma cell 998 1 148 34 1 28 848 NSUN4,UQCRH,FAAH,LRRC41
SE_00_000300928 chr1:46339275-46344487 Sample_00_0003 Adrenal gland adrenal-gland_97d 928 1 147 34 1 28 846 NSUN4,FAAH,LRRC41,UQCRH
SE_02_092800461 chr1:46339372-46375241 Sample_02_0928 Peripheral blood neutrophils_Ecoli 461 8 980 271 1 80 1634 NSUN4,UQCRH,FAAH,LRRC41
Genomic distribution of SEs associated with LRRC41
Genome Browser

The strength of the tissue affected by the gene

Expression of LRRC41

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)