SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000173621
Gene: LRFN4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:66856647-66860475 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122400271 chr11:66748536-66840929 Sample_02_1224 Bone marrow normal plasma cell 271 65 2027 92 5 85 653 C11ORF80,LRFN4,RCE1,SPTBN2
SE_02_108300595 chr11:66817859-66844261 Sample_02_1083 Macula macula 595 4 567 24 0 54 636 C11ORF80,RCE1,LRFN4
SE_02_028600444 chr11:66840304-66847277 Sample_02_0286 Liver HuH7_IL-1alpha_1h 444 1 205 12 0 88 856 C11ORF80,RCE1,LRFN4
SE_02_039601647 chr11:66841590-66846326 Sample_02_0396 Skin NHEK-D 1647 1 152 7 0 81 780 C11ORF80,RCE1,LRFN4
SE_02_128300272 chr11:66863392-66894719 Sample_02_1283 Lung NCI-H2107_p8-15 272 7 755 81 3 91 902 PC,LRFN4,MIR3163,RCE1
SE_02_068600400 chr11:66863958-66894705 Sample_02_0686 Lung NCI-H128_no infection 400 11 734 81 3 81 810 PC,LRFN4,MIR3163,RCE1
SE_02_087400233 chr11:66865783-66904773 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 233 8 914 102 4 81 779 PC,LRFN4,MIR3163,RCE1
SE_02_151000353 chr11:66868867-66907323 Sample_02_1510 Lung H3122_LR_Pano 353 11 918 109 4 74 601 PC,LRFN4,MIR3163,RCE1
SE_02_087200298 chr11:66869102-66904796 Sample_02_0872 Colon HCT116_siCtrl-5FU 298 9 826 100 3 64 545 PC,LRFN4,MIR3163,RCE1
SE_02_031200337 chr11:66874608-66959593 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 337 8 2082 227 4 155 299 PC,C11ORF86,RCE1,LRFN4
SE_02_127300833 chr11:66876797-66893658 Sample_02_1273 Cervix HeLa 833 1 398 58 2 33 0 PC,LRFN4,MIR3163,RCE1
SE_03_001300364 chr11:66877444-66907299 Sample_03_0013 Lung A549 364 3 724 91 4 37 0 PC,RCE1,LRFN4
SE_03_001000376 chr11:66877606-66907168 Sample_03_0010 Lung A549_dexamethasone_1h 376 4 713 89 4 37 0 PC,RCE1,LRFN4
SE_03_000500397 chr11:66877610-66907063 Sample_03_0005 Lung A549_dexamethasone_0.5h 397 3 710 89 4 37 0 PC,RCE1,LRFN4
SE_01_000600416 chr11:66877700-66907575 Sample_01_0006 Lung A549_ethanol_1h 416 6 725 89 4 37 0 PC,RCE1,LRFN4
SE_01_001200521 chr11:66877838-66916745 Sample_01_0012 Lung A549_dexamethasone_1h 521 6 987 111 4 48 78 PC,RCE1,LRFN4
SE_02_078000481 chr11:66878036-66893688 Sample_02_0780 Liver SMMC-7721 481 1 371 53 2 33 0 PC,LRFN4,MIR3163,RCE1
SE_02_064502167 chr11:66878069-66907099 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2167 8 697 87 4 37 0 PC,LRFN4,MIR3163,RCE1
SE_02_072500574 chr11:66878085-66905863 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 574 11 655 83 4 35 0 PC,LRFN4,MIR3163,RCE1
SE_02_097100355 chr11:66878534-66921805 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 355 11 1088 117 4 55 78 PC,LRFN4,MIR3163,RCE1
SE_02_086800244 chr11:66878937-66937717 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 244 18 1458 150 4 66 78 PC,MIR3163,C11ORF86,RCE1,LRFN4
SE_02_149000061 chr11:66879604-66904668 Sample_02_1490 Lung H2087 61 6 572 69 3 30 0 PC,LRFN4,MIR3163,RCE1
SE_02_011300462 chr11:66879932-66893679 Sample_02_0113 Connective tissue HT1080_DOX5d 462 4 320 43 2 29 0 PC,RCE1,LRFN4
SE_02_011200579 chr11:66880023-66907321 Sample_02_0112 Connective tissue HT1080_untreated 579 5 651 75 4 33 0 PC,RCE1,LRFN4
SE_02_011600464 chr11:66880069-66907436 Sample_02_0116 Mammary gland MDA-MB-231_untreat 464 3 657 75 4 33 0 PC,RCE1,LRFN4
SE_02_150201093 chr11:66880206-66904687 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1093 7 556 66 3 30 0 PC,LRFN4,MIR3163,RCE1
SE_03_000900616 chr11:66880298-66907243 Sample_03_0009 Lung A549_dexamethasone_3h 616 2 642 75 4 33 0 PC,RCE1,LRFN4
SE_02_065200919 chr11:66880359-66906074 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 919 8 601 71 4 32 0 PC,LRFN4,MIR3163,RCE1
SE_02_064801289 chr11:66880400-66906100 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1289 9 600 70 4 32 0 PC,LRFN4,MIR3163,RCE1
SE_02_006800294 chr11:66880419-66916849 Sample_02_0068 Skin A375_DMSO 294 8 920 98 4 44 78 PC,RCE1,LRFN4
SE_03_000700488 chr11:66880537-66907065 Sample_03_0007 Lung A549_dexamethasone_12h 488 3 632 74 4 33 0 PC,RCE1,LRFN4
SE_02_064700916 chr11:66880626-66906107 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 916 9 593 69 4 32 0 PC,LRFN4,MIR3163,RCE1
SE_03_001500591 chr11:66880627-66906991 Sample_03_0015 Lung A549_dexamethasone_8h 591 2 626 73 4 33 0 PC,RCE1,LRFN4
SE_03_001400443 chr11:66880642-66907257 Sample_03_0014 Lung A549_dexamethasone_2h 443 2 634 73 4 33 0 PC,RCE1,LRFN4
SE_04_000900562 chr11:66880660-66906733 Sample_04_0009 Lung A549 562 4 619 72 4 31 0 PC,LRFN4,MIR3163,RCE1
SE_02_018000360 chr11:66881041-66916786 Sample_02_0180 melanoma CJM 360 7 908 96 4 43 78 PC,RCE1,LRFN4
SE_02_048100943 chr11:66881281-66908507 Sample_02_0481 Mammary gland MDA-MB231 943 7 667 72 4 32 78 PC,LRFN4,MIR3163,RCE1
SE_02_096700316 chr11:66881285-66921679 Sample_02_0967 Brain H3.3K27M_JN57 316 11 1022 105 4 49 78 PC,LRFN4,MIR3163,RCE1
SE_02_084600416 chr11:66881431-66905845 Sample_02_0846 Mammary gland MDA-MB-231_untreat 416 5 575 67 4 25 0 PC,LRFN4,MIR3163,RCE1
SE_04_001000318 chr11:66881723-66906823 Sample_04_0010 Lung A549 TGFb 318 2 607 72 4 23 0 PC,LRFN4,MIR3163,RCE1
SE_02_032800252 chr11:66881807-66921972 Sample_02_0328 Embryo H9_naive 252 7 1024 106 4 44 78 PC,RCE1,LRFN4
SE_02_026800751 chr11:66881822-66904602 Sample_02_0268 Kidney A-498 751 7 528 62 3 21 0 PC,RCE1,LRFN4
SE_02_030100370 chr11:66881948-66982645 Sample_02_0301 Neuroblastoma GIMEN 370 14 2465 237 4 167 748 C11ORF86,PC,RCE1,LRFN4,SYT12
SE_02_122800859 chr11:66882160-66905993 Sample_02_1228 Mammary gland MDA-MB-231_2 859 7 565 66 3 18 0 PC,LRFN4,MIR3163,RCE1
SE_02_042300431 chr11:66882207-66917920 Sample_02_0423 Skin A375 431 10 914 96 3 33 78 PC,RCE1,LRFN4
SE_02_099100661 chr11:66882255-66907791 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 661 8 623 70 3 19 23 PC,LRFN4,MIR3163,RCE1
SE_04_000600474 chr11:66882378-66906924 Sample_04_0006 Lung A549 GFP control 474 5 591 69 3 18 0 PC,LRFN4,MIR3163,RCE1
SE_04_000300184 chr11:66882440-66904662 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 184 4 513 60 2 16 0 PC,LRFN4,MIR3163,RCE1
SE_02_068100321 chr11:66882507-66915826 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 321 4 848 92 3 30 78 PC,LRFN4,MIR3163,RCE1
SE_04_000400213 chr11:66882644-66904820 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 213 4 522 59 2 16 0 PC,LRFN4,MIR3163,RCE1
SE_02_071600538 chr11:66882762-66907204 Sample_02_0716 Pancreas SUIT2_GFP 538 6 599 68 3 19 0 PC,LRFN4,MIR3163,RCE1
SE_02_071900388 chr11:66882939-66906066 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 388 5 551 62 3 18 0 PC,LRFN4,MIR3163,RCE1
SE_02_153700200 chr11:66882970-66907154 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 200 4 588 66 3 19 0 PC,LRFN4,MIR3163,RCE1
SE_02_037600300 chr11:66883026-66894794 Sample_02_0376 Skeletal muscle RMS237 300 2 275 34 1 16 0 PC,RCE1,LRFN4
SE_02_153600340 chr11:66883049-66906750 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 340 6 575 65 3 18 0 PC,LRFN4,MIR3163,RCE1
SE_02_071500234 chr11:66883355-66907389 Sample_02_0715 Pancreas SUIT2_TP63dN 234 5 588 64 3 19 0 PC,LRFN4,MIR3163,RCE1
SE_02_072100990 chr11:66883449-66906091 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 990 5 535 58 3 18 0 PC,LRFN4,MIR3163,RCE1
SE_02_057000467 chr11:66883792-66917114 Sample_02_0570 Brain LN229_10_mM_glucose 467 8 858 84 3 29 78 PC,LRFN4,MIR3163,RCE1
SE_02_106700271 chr11:66884043-66904818 Sample_02_1067 Bone SJSA-1 271 8 489 50 2 15 0 PC,LRFN4,MIR3163,RCE1
SE_02_001600333 chr11:66891361-66937811 Sample_02_0016 Blood erythroblasts 333 6 1169 111 3 39 78 PC,C11ORF86,RCE1,LRFN4
SE_02_057100774 chr11:66891724-66917197 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 774 7 665 65 3 19 78 PC,LRFN4,MIR3163,RCE1
SE_02_046501142 chr11:66903895-66909465 Sample_02_0465 Adipose subcutaneous adipocytes 1142 1 177 16 1 6 78 PC,LRFN4,MIR3163
SE_02_096100459 chr11:66905112-66921225 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 459 5 455 42 1 23 78 PC,LRFN4,MIR3163
SE_02_101300618 chr11:66905234-66920546 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 618 9 428 39 1 20 78 PC,LRFN4,MIR3163
Genomic distribution of SEs associated with LRFN4
Genome Browser

The strength of the tissue affected by the gene

Expression of LRFN4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)